FC876205
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_SALTY (Succinate dehydrogenase flavoprotein subunit OS=Salmonella typhimurium GN=sdhA PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30 Identity = 90/245 (36.73%), Postives = 125/245 (51.02%), Query Frame = 1 Query: 1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKYG-LDITRQPIPCGPAAHY 711 GG R AAD TG + L + + + + ++F +A+DL+ DG C L +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME QFHPT +A G+ L+TE RG+GG L N ERFM Y +LA RDVVARSI ++++ + L + H E + S P I + +D ++PIP P HY Sbjct: 127 GGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC---TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 355
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_ECOLI (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) GN=sdhA PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30 Identity = 90/245 (36.73%), Postives = 125/245 (51.02%), Query Frame = 1 Query: 1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKYG-LDITRQPIPCGPAAHY 711 GG R AAD TG + L + + + + ++F +A+DL+ DG C L +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME QFHPT +A G+ L+TE RG+GG L N ERFM Y +LA RDVVARSI ++++ + L + H E + S P I + +D ++PIP P HY Sbjct: 127 GGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC---TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 355
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_ECOL6 (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O6 GN=sdhA PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30 Identity = 90/245 (36.73%), Postives = 125/245 (51.02%), Query Frame = 1 Query: 1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKYG-LDITRQPIPCGPAAHY 711 GG R AAD TG + L + + + + ++F +A+DL+ DG C L +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME QFHPT +A G+ L+TE RG+GG L N ERFM Y +LA RDVVARSI ++++ + L + H E + S P I + +D ++PIP P HY Sbjct: 127 GGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC---TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 355
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_ECO57 (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O157:H7 GN=sdhA PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30 Identity = 90/245 (36.73%), Postives = 125/245 (51.02%), Query Frame = 1 Query: 1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKYG-LDITRQPIPCGPAAHY 711 GG R AAD TG + L + + + + ++F +A+DL+ DG C L +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME QFHPT +A G+ L+TE RG+GG L N ERFM Y +LA RDVVARSI ++++ + L + H E + S P I + +D ++PIP P HY Sbjct: 127 GGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC---TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 355
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSAB_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial OS=Xenopus laevis GN=sdha-B PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30 Identity = 88/243 (36.21%), Postives = 126/243 (51.85%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G HR AD TG + L + + S F +FA+DLL + C GV L +E + RF +K T++A+GG G Y S T+ TGDG AM RA ++EFVQFHPT + G LITE RG+GGIL N ERFM Y +LA RDVV+RS+ ++++ +++ +V L + H P ++ S P I+ + + G+D+T++PIP P HY Sbjct: 186 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCMEDGSIHRFRAKNTVIATGGYGRTYFSCTSAHTCTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSEGERFMERYAPVAKDLASRDVVSRSMTIEMREGRGCGKDKDHVYLQLHHLPPSQLASRLPGISETAMIFAGVDVTKEPIPVLPTVHY 411
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30 Identity = 87/243 (35.80%), Postives = 127/243 (52.26%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G HR AD TG + L + + S F +FA+DLL + C GV L +E + RF +K T++A+GG G + S T+ +TGDG AM RA ++EFVQFHPT + G LITE RG+GGIL N ERFM Y +LA RDVV+RS+ ++++ +++ +V L + H P ++ S P I+ + + G+D+T++PIP P HY Sbjct: 186 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCMEDGSIHRFRAKNTVIATGGYGRTFFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGKDKDHVYLQLHHLPPSQLASRLPGISETAMIFAGVDVTKEPIPVLPTVHY 411
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 8.293e-30 Identity = 87/243 (35.80%), Postives = 126/243 (51.85%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G HR AD TG + L + + S F +FA+DLL + C GV L +E + RF +K T++A+GG G + S T+ TGDG AM RA ++EFVQFHPT + G LITE RG+GGIL N ERFM Y +LA RDVV+RS+ ++++ +++ +V L + H P ++ S P I+ + + G+D+T++PIP P HY Sbjct: 186 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCMEDGSIHRFRAKNTVIATGGYGRTFFSCTSAHTCTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGKDKDHVYLQLHHLPPSQLASRLPGISETAMIFAGVDVTKEPIPVLPTVHY 411
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_CHICK (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Gallus gallus GN=SDHA PE=1 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 8.293e-30 Identity = 87/243 (35.80%), Postives = 126/243 (51.85%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G HR AD TG + L + + S F +FA+DLL + C GV L +E + RF +K T++A+GG G Y S T+ +TGDG AM RA ++EFVQFHPT + G LITE RG+GGIL N ERFM Y +LA RDVV+RS+ ++++ + +V L + H P +++ + P I+ + + G+D+T++PIP P HY Sbjct: 184 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHY 409
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_SULSO (L-aspartate oxidase OS=Sulfolobus solfataricus GN=nadB PE=3 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29 Identity = 89/237 (37.55%), Postives = 127/237 (53.59%), Query Frame = 1 Query: 1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711 GGHS RI+H D TGREI LL + I++ E D L L D G T ++ F ++ +LA+GG G+++ T+NP GDG+A+A +A A++S+ EFVQFHPT +G ++L+TE +RG+G IL N ERF+ YD R ELAPRDV++R+I DQ KK + Y+ D+S P E FP ++ +YG + + P HY Sbjct: 103 GGHSKRRILHKTDDTGREITNFLLN-LAKKKGINLIE-----DKLLALKVKDGKVAGFIT-----EKGGSFDAEKVVLATGGYGYLFKFTSNPSTNIGDGIAIAFKAGALVSDTEFVQFHPTVTTFDG----------QAYLLTETLRGEGAILVNERNERFVFKYDSRGELAPRDVLSRAIYDQYKKGHTVYI--DLS--PIEDFDRKFPILSNYVKRYG-----KRLQVFPGVHY 309
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29 Identity = 87/243 (35.80%), Postives = 127/243 (52.26%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G HR AD TG + L + + S F +FA+DLL D C GV L +E + RF +K T++A+GG G + S T+ +TGDG AM RA ++EFVQFHPT + G LITE RG+GGIL N ERFM Y +LA RDVV+RS+ ++++ ++ +V L + H P +++ + P I+ + + G+D+T++PIP P HY Sbjct: 180 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----DGECKGVIALCMEDGSIHRFRAKNTVIATGGYGRTFFSCTSAHTSTGDGNAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSEGERFMERYAPNAKDLASRDVVSRSMTIEIREGRGVGPDKDHVHLQLHHLPPQQLAARLPGISETAMIFAGVDVTKEPIPVLPTVHY 405 The following BLAST results are available for this feature:
BLAST of FC876205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876205 ID=FC876205; Name=FC876205; organism=Citrus clementina; type=EST; length=712bpback to top |