FC876205

Overview
NameFC876205
Unique NameFC876205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RAT (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus GN=Sdha PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.414e-29
Identity = 87/243 (35.80%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + R  +K T++A+GG G  Y S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++       + +V L + H P E++ +  P I+   + + G+D+T++PIP  P  HY
Sbjct:  175 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCIEDGSIHRIRAKNTIIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHY 400          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_MOUSE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Mus musculus GN=Sdha PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 87/243 (35.80%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + R  +K T++A+GG G  Y S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++       + +V L + H P E++ +  P I+   + + G+D+T++PIP  P  HY
Sbjct:  183 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCIEDGSIHRIRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHY 408          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_SCHPO (Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 86/243 (35.39%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   +R    AD TG  I   L    +   N + F  +FA+DL+  ++G +  C GV  +N+E   + RF +  T+LA+GG G  Y S T+    TGDG AM  RA   + ++EFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R++  ++++       + +  L +SH P E +    P I+     + G+D+T++PIP  P  HY
Sbjct:  176 GGQAYRCAAVADRTGHSILHTLYGQSLKH-NTNFFIEYFAMDLI--MEGGE--CRGVIAMNLEDGSIHRFRAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVSRAGLPLQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVGPEKDHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHY 401          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 87/243 (35.80%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + R  +K T++A+GG G  Y S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++       + +V L + H P E++ +  P I+   + + G+D+T++PIP  P  HY
Sbjct:  183 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCIEDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHY 408          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 87/243 (35.80%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + R  +K T++A+GG G  Y S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++       + +V L + H P E++ +  P I+   + + G+D+T++PIP  P  HY
Sbjct:  183 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCIEDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHY 408          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 87/243 (35.80%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + R  +K T++A+GG G  Y S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++       + +V L + H P E++ +  P I+   + + G+D+T++PIP  P  HY
Sbjct:  183 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NRECRGVIALCIEDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHY 408          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_HALSA (L-aspartate oxidase OS=Halobacterium salinarium GN=nadB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 90/239 (37.66%), Postives = 123/239 (51.46%), Query Frame = 1
Query:    7 HSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVET----QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            HS  RI+H    TG  I    L  + +  N+ + E   A+DL+T      AV   +   N  T    +  V   +  T+LA+GG G +Y  +TNP  +TGDG+AMA  A A +++ E+VQFHPTA  D            + FL++EAVRG+G +L N   ERFMP Y E +ELAPRDVVAR++  +     E  V LD+S          FP +A  C   G+D     IP  P  H+
Sbjct:  117 HSAARILHVDAATGHHILGPFLRHLDAHENVDMLEDAAALDLITD---EGAVTGALLDRNPRTGDRAETGVPVFAGSTVLATGGIGDLYRRSTNPRGSTGDGVAMAALAGADVTDAEYVQFHPTAYDD-----------ADPFLVSEAVRGEGALLRNADGERFMPDYHEDAELAPRDVVARAVAAERDATGE--VRLDVS---PLAFAEEFPGLAEACADRGVD-WETGIPVAPCEHF 335          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=YJL045W PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 86/243 (35.39%), Postives = 123/243 (50.62%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   +R    AD TG  +   L    + + N   F  +FA+DLLT     +    GV   N E   + RF +  T++A+GG G  Y S T+    TGDG AM  RA   + ++EFVQFHP+ +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R+I  +++      +N+ ++LL +SH P E +    P I+     + G+D+T++PIP  P  HY
Sbjct:  168 GGQAYRTCAVADRTGHAMLHTLYGQALKN-NTHFFIEYFAMDLLTH----NGEVVGVIAYNQEDGTIHRFRAHKTVIATGGYGRAYFSCTSAHTCTGDGNAMVSRAGFPLEDLEFVQFHPSGIYGSGC------------LITEGARGEGGFLLNSEGERFMERYAPTAKDLASRDVVSRAITMEIRAGRGVGKNKDHILLQLSHLPPEVLKERLPGISETAAVFAGVDVTQEPIPVLPTVHY 393          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_DROME (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Drosophila melanogaster GN=Scs-fp PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 86/243 (35.39%), Postives = 123/243 (50.62%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +S  + + F  +FA+DL+      D  C GV  LN+E   + RF +K T++A+GG G  + S T+    TGDG AM  R      ++EFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+RS+  ++ +       + +V L + H P +++    P I+   + + G+D+TR+PIP  P  HY
Sbjct:  180 GGQAHRCCAVADRTGHSLLHTLYGQSLSY-DCNYFVEYFALDLIFE----DGECRGVLALNLEDGTLHRFRAKNTVIATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIMEGRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVLPTVHY 405          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 87/238 (36.55%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   19 RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            R   AAD TG  +   L    V   N   F  +F  DL+  ++  D  C GV  +N+E   + RF S  T++A+GG G  Y S T+    TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GG L N   ERFMP Y    ++LA RDVV+RS   ++++       + + LL+++H   E I    P I    + + G+D+T++PIP  P  HY
Sbjct:  166 RCCAAADRTGHALLHTLYGQAVKH-NTKFFIEYFVTDLI--MENGD--CRGVVAINLEDGTIHRFRSHATVIATGGYGRAYFSATSAHTCTGDGNAMVIRAGLPCQDLEFVQFHPTGIYGSGC------------LITEGARGEGGYLLNSSGERFMPRYAPSVADLASRDVVSRSETMEIREGRGVGPEKDHCLLNLTHLSPEIIDERLPGIRETAMIFAGVDVTKEPIPVIPTVHY 386          
The following BLAST results are available for this feature:
BLAST of FC876205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DHSA_RAT1.414e-2935.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MOUSE1.847e-2935.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_SCHPO3.151e-2935.39Probable succinate dehydrogenase [ubiquinone] flav... [more]
DHSA_PONAB3.151e-2935.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_HUMAN3.151e-2935.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MACFA4.116e-2935.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
NADB_HALSA7.020e-2937.66L-aspartate oxidase OS=Halobacterium salinarium GN... [more]
DHSX_YEAST7.020e-2935.39Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DROME9.168e-2935.39Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DICDI1.197e-2836.55Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionC32001F10EF DevOvary1 Citrus clementina cDNA clone C32001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876205 ID=FC876205; Name=FC876205; organism=Citrus clementina; type=EST; length=712bp
GGGGGACACTCCCATCACAGAATCGTCCATGCTGCAGATATGACTGGAAG
GGAGATCGAGCGGGCTCTTTTGGAAGCTGTTGTCAGTGACCCTAATATCT
CAGTGTTCGAGCATCACTTTGCGATAGATTTGCTAACTACTCTGGATGGT
CCTGATGCAGTTTGTCACGGTGTTGACACTTTAAATGTTGAAACACAAGA
GGTGGTACGATTCATTTCAAAGGTGACCTTACTTGCATCAGGTGGAGCTG
GGCATATTTATCCATCGACAACAAATCCTCTGGTGGCCACTGGAGATGGG
ATGGCTATGGCCCACCGAGCTCAAGCAGTGATTTCAAACATGGAATTTGT
GCAGTTCCACCCAACTGCCTTAGCTGATGAGGGCCTTCCCATCAAACCAA
AGAAAACTCGAGAGAATTCATTTCTCATCACTGAAGCTGTCAGGGGTGAT
GGAGGCATCCTTTACAATTTAGGCATGGAACGGTTCATGCCCCTGTATGA
TGAGAGATCTGAGCTTGCTCCTAGGGATGTGGTGGCAAGAAGTATAGATG
ACCAGCTTAAAAAGCGTAATGAGAAGTATGTGCTCCTTGATATAAGTCAC
AGGCCCACGGAAAAAATACTGTCCCACTTTCCCAACATAGCTGCTGAATG
CCTTAAGTATGGACTGGACATAACCCGCCAGCCAATTCCCTGTGGTCCTG
CTGCACATTACA
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