FC876205

Overview
NameFC876205
Unique NameFC876205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 86/243 (35.39%), Postives = 122/243 (50.21%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G +  R   AAD TG  I   L +  +    +  F  +FAIDLL      D  C GV   N++   +  F +   +LA+GG G  Y S T+    TGDG  MA RA   + +MEFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R++  ++++      ++ +V L ++H   E + S  P I+     + G+D+T++PIP  P  HY
Sbjct:  133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFVEYFAIDLLME----DGECRGVVAWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEILHSRLPGISETAKIFAGVDVTKEPIPVLPTVHY 358          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.484e-28
Identity = 86/243 (35.39%), Postives = 122/243 (50.21%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G +  R   AAD TG  I   L +  +    +  F  +FAIDLL      D  C GV   N++   +  F +   +LA+GG G  Y S T+    TGDG  MA RA   + +MEFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R++  ++++      ++ +V L ++H   E + S  P I+     + G+D+T++PIP  P  HY
Sbjct:  133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFVEYFAIDLLME----DGECRGVVVWNLDDGTLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEILHSRLPGISETAKIFAGVDVTKEPIPVLPTVHY 358          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 85/243 (34.98%), Postives = 122/243 (50.21%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL         C GV  L +E   + R  ++ T++A+GG G  Y S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++       + +V L + H P  ++    P I+   + + G+D+T++PIP  P  HY
Sbjct:  184 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----SGECRGVIALCIEDGSIHRIRARNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPAQLAMRLPGISETAMIFAGVDVTKEPIPVLPTVHY 409          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27
Identity = 85/243 (34.98%), Postives = 122/243 (50.21%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G +  R   AAD TG  I   L +  +    +  F  +FAIDLL      +  C GV   N++   +  F +   +LA+GG G  Y S T+    TGDG  MA RA   + +MEFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R++  ++++      ++ +V L ++H   E + S  P I+     + G+D+T++PIP  P  HY
Sbjct:  133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFIEYFAIDLLME----NGECRGVVAWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEIVHSRLPGISETAKIFAGVDVTKEPIPVLPTVHY 358          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_PARDE (Succinate dehydrogenase flavoprotein subunit OS=Paracoccus denitrificans GN=sdhA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 84/238 (35.29%), Postives = 119/238 (50.00%), Query Frame = 1
Query:   19 RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            R   AAD TG  I   L    + +     F  +FA+DL+ T    D  C GV    ++   +  F +K+ +LA+GG G  Y S T+    TGDG  M  RA   + +MEFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R I  ++++      ++ ++ L++ H P E +    P I+     + G+D+TR+PIP  P  HY
Sbjct:  137 RTCAAADRTGHAILHTLYGQSLKE-KAEFFIEYFALDLIIT----DGACTGVVCWKLDDGTIHVFNAKMVVLATGGYGRAYFSATSAHTCTGDGGGMVARAGLPLQDMEFVQFHPTGIYGSGC------------LITEGARGEGGYLTNSEGERFMERYAPTYKDLASRDVVSRCITIEIREGRGVGPHKDHMHLNLMHLPPESLAERLPGISESAKIFAGVDVTREPIPILPTVHY 357          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_COXBU (Succinate dehydrogenase flavoprotein subunit OS=Coxiella burnetii GN=sdhA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 89/251 (35.46%), Postives = 122/251 (48.61%), Query Frame = 1
Query:    1 GGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-SELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            GGH+         R    AD TG  +   L +  V +     +   + IDL+    G  A   G+  +N+ET E+V F S+ T+ A+GGAG IY +T+N    TGDG+ M  RA   + +MEF QFHPT +   G             LITE  RG+GG L N   ERFM  Y     +L  RDVVARSI  ++         + +VLL + H   + +    P I     K+  +DIT++PIP  P  HY
Sbjct:  122 GGHTRDFGKEMARRTCACADRTGHAMLHTLYQKNV-EAGTHFYYEWYGIDLVRGAQGGIA---GMIAMNMETSELVFFKSRATIFATGGAGRIYETTSNAYTNTGDGIGMVLRAGLPVQDMEFWQFHPTGIYGVGC------------LITEGARGEGGYLINKDGERFMERYSPHLKDLDCRDVVARSILQEVMAGGGVGPKKDHVLLKLDHLGEKVLRERLPGIIELSEKFANVDITKEPIPILPTCHY 356          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 85/244 (34.84%), Postives = 124/244 (50.82%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALL-EAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   +R    AD TG  +   L  +A+  D +   F  +FA+DLLT     +    GV   N E   + RF +  T++A+GG G  Y S T+    TGDG AM  RA   + ++EFVQFHP+ +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R+I  ++++     + + ++ L +SH P E +    P I+     + G+D+T++PIP  P  HY
Sbjct:  174 GAQAYRTCAVADRTGHALLHTLYGQALRHDTHF--FIEYFALDLLTH----NGEVVGVIAYNQEDGTIHRFRAHKTIIATGGYGRAYFSCTSAHTCTGDGNAMVSRAGFPLQDLEFVQFHPSGIYGSGC------------LITEGARGEGGFLVNSEGERFMERYAPTAKDLACRDVVSRAITMEIREGRGVGKKKDHMYLQLSHLPPEVLKERLPGISETAAIFAGVDVTKEPIPIIPTVHY 399          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 84/243 (34.57%), Postives = 119/243 (48.97%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G +  R   AAD TG  I   L +  +    +  F  +FAIDLL      D  C GV   N++   +  F +   +LA+GG G  Y S T+    TGDG  M  RA   + +MEFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R++  ++++      ++ +V L ++H   E +    P I+     + G+D+T+ PIP  P  HY
Sbjct:  133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFIEYFAIDLLME----DGECRGVVAWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMVIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEILHRRLPGISETAKIFAGVDVTKDPIPVLPTVHY 358          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_ECOLI (Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 82/256 (32.03%), Postives = 120/256 (46.88%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY------------DERSELAPRDVVARSIDDQLKKRNE------KYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L +  +  P I  F+ HF +D+L      D    G+  +N+    +V+  +   ++A+GGAG +Y   TN  + TGDGM MA      + +MEFVQ+HPT L   G+            L+TE  RG+GGIL N    R++  Y            ++  EL PRD V+++   + +K N         V LD+ H   +K+    P I      Y G+D  ++PIP  P AHY
Sbjct:  118 GGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD----DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGI------------LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHY 357          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_AQUAE (L-aspartate oxidase OS=Aquifex aeolicus GN=nadB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.121e-26
Identity = 85/238 (35.71%), Postives = 122/238 (51.26%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI-SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            GGHS  R++   D TGREI   LL+    +  I +        ++          +GV  +    +  ++FI + + +LA+GGA  +Y  T+NP    GD + +A R  A + N EFVQFHPT L            +  + LI+EAVRG+G IL N   ERF+      +EL PRD VAR+I +Q+K+  E Y+ L    +   KI   FP I +   + G D  R+P+P  PAAHY
Sbjct:  123 GGHSKPRVLKVKDYTGREIYTKLLKKT-EELGIKILHGELQEIIIEE--------NGVQGVIYSEEGSLKFIRTPLLILATGGAASMYYYTSNPKKVRGDAIGIAFRMGATVKNPEFVQFHPTVL------------KGTNLLISEAVRGEGAILVNDRGERFV------NELLPRDEVARAIYNQIKRGREVYLDLRPVAQKGIKIEERFPTIYSFLRERGYDPYREPVPIIPAAHY 333          
The following BLAST results are available for this feature:
BLAST of FC876205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DHSA_RICCN2.668e-2835.39Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICFE3.484e-2835.39Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_BOVIN4.550e-2834.98Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RICBR1.014e-2734.98Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_PARDE1.324e-2735.29Succinate dehydrogenase flavoprotein subunit OS=Pa... [more]
DHSA_COXBU1.324e-2735.46Succinate dehydrogenase flavoprotein subunit OS=Co... [more]
DHSA_YEAST5.031e-2734.84Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RICPR6.571e-2734.57Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
FRDA_ECOLI8.581e-2732.03Fumarate reductase flavoprotein subunit OS=Escheri... [more]
NADB_AQUAE1.121e-2635.71L-aspartate oxidase OS=Aquifex aeolicus GN=nadB PE... [more]

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Properties
Property NameValue
Genbank descriptionC32001F10EF DevOvary1 Citrus clementina cDNA clone C32001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876205 ID=FC876205; Name=FC876205; organism=Citrus clementina; type=EST; length=712bp
GGGGGACACTCCCATCACAGAATCGTCCATGCTGCAGATATGACTGGAAG
GGAGATCGAGCGGGCTCTTTTGGAAGCTGTTGTCAGTGACCCTAATATCT
CAGTGTTCGAGCATCACTTTGCGATAGATTTGCTAACTACTCTGGATGGT
CCTGATGCAGTTTGTCACGGTGTTGACACTTTAAATGTTGAAACACAAGA
GGTGGTACGATTCATTTCAAAGGTGACCTTACTTGCATCAGGTGGAGCTG
GGCATATTTATCCATCGACAACAAATCCTCTGGTGGCCACTGGAGATGGG
ATGGCTATGGCCCACCGAGCTCAAGCAGTGATTTCAAACATGGAATTTGT
GCAGTTCCACCCAACTGCCTTAGCTGATGAGGGCCTTCCCATCAAACCAA
AGAAAACTCGAGAGAATTCATTTCTCATCACTGAAGCTGTCAGGGGTGAT
GGAGGCATCCTTTACAATTTAGGCATGGAACGGTTCATGCCCCTGTATGA
TGAGAGATCTGAGCTTGCTCCTAGGGATGTGGTGGCAAGAAGTATAGATG
ACCAGCTTAAAAAGCGTAATGAGAAGTATGTGCTCCTTGATATAAGTCAC
AGGCCCACGGAAAAAATACTGTCCCACTTTCCCAACATAGCTGCTGAATG
CCTTAAGTATGGACTGGACATAACCCGCCAGCCAATTCCCTGTGGTCCTG
CTGCACATTACA
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