FC876205
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28 Identity = 86/243 (35.39%), Postives = 122/243 (50.21%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G + R AAD TG I L + + + F +FAIDLL D C GV N++ + F + +LA+GG G Y S T+ TGDG MA RA + +MEFVQFHPT + G LITE RG+GG L N ERFM Y +LA RDVV+R++ ++++ ++ +V L ++H E + S P I+ + G+D+T++PIP P HY Sbjct: 133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFVEYFAIDLLME----DGECRGVVAWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEILHSRLPGISETAKIFAGVDVTKEPIPVLPTVHY 358
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.484e-28 Identity = 86/243 (35.39%), Postives = 122/243 (50.21%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G + R AAD TG I L + + + F +FAIDLL D C GV N++ + F + +LA+GG G Y S T+ TGDG MA RA + +MEFVQFHPT + G LITE RG+GG L N ERFM Y +LA RDVV+R++ ++++ ++ +V L ++H E + S P I+ + G+D+T++PIP P HY Sbjct: 133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFVEYFAIDLLME----DGECRGVVVWNLDDGTLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEILHSRLPGISETAKIFAGVDVTKEPIPVLPTVHY 358
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3) HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28 Identity = 85/243 (34.98%), Postives = 122/243 (50.21%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G HR AD TG + L + + S F +FA+DLL C GV L +E + R ++ T++A+GG G Y S T+ +TGDG AM RA ++EFVQFHPT + G LITE RG+GGIL N ERFM Y +LA RDVV+RS+ ++++ + +V L + H P ++ P I+ + + G+D+T++PIP P HY Sbjct: 184 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----SGECRGVIALCIEDGSIHRIRARNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPAQLAMRLPGISETAMIFAGVDVTKEPIPVLPTVHY 409
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27 Identity = 85/243 (34.98%), Postives = 122/243 (50.21%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G + R AAD TG I L + + + F +FAIDLL + C GV N++ + F + +LA+GG G Y S T+ TGDG MA RA + +MEFVQFHPT + G LITE RG+GG L N ERFM Y +LA RDVV+R++ ++++ ++ +V L ++H E + S P I+ + G+D+T++PIP P HY Sbjct: 133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFIEYFAIDLLME----NGECRGVVAWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEIVHSRLPGISETAKIFAGVDVTKEPIPVLPTVHY 358
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_PARDE (Succinate dehydrogenase flavoprotein subunit OS=Paracoccus denitrificans GN=sdhA PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27 Identity = 84/238 (35.29%), Postives = 119/238 (50.00%), Query Frame = 1 Query: 19 RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 R AAD TG I L + + F +FA+DL+ T D C GV ++ + F +K+ +LA+GG G Y S T+ TGDG M RA + +MEFVQFHPT + G LITE RG+GG L N ERFM Y +LA RDVV+R I ++++ ++ ++ L++ H P E + P I+ + G+D+TR+PIP P HY Sbjct: 137 RTCAAADRTGHAILHTLYGQSLKE-KAEFFIEYFALDLIIT----DGACTGVVCWKLDDGTIHVFNAKMVVLATGGYGRAYFSATSAHTCTGDGGGMVARAGLPLQDMEFVQFHPTGIYGSGC------------LITEGARGEGGYLTNSEGERFMERYAPTYKDLASRDVVSRCITIEIREGRGVGPHKDHMHLNLMHLPPESLAERLPGISESAKIFAGVDVTREPIPILPTVHY 357
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_COXBU (Succinate dehydrogenase flavoprotein subunit OS=Coxiella burnetii GN=sdhA PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27 Identity = 89/251 (35.46%), Postives = 122/251 (48.61%), Query Frame = 1 Query: 1 GGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-SELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 GGH+ R AD TG + L + V + + + IDL+ G A G+ +N+ET E+V F S+ T+ A+GGAG IY +T+N TGDG+ M RA + +MEF QFHPT + G LITE RG+GG L N ERFM Y +L RDVVARSI ++ + +VLL + H + + P I K+ +DIT++PIP P HY Sbjct: 122 GGHTRDFGKEMARRTCACADRTGHAMLHTLYQKNV-EAGTHFYYEWYGIDLVRGAQGGIA---GMIAMNMETSELVFFKSRATIFATGGAGRIYETTSNAYTNTGDGIGMVLRAGLPVQDMEFWQFHPTGIYGVGC------------LITEGARGEGGYLINKDGERFMERYSPHLKDLDCRDVVARSILQEVMAGGGVGPKKDHVLLKLDHLGEKVLRERLPGIIELSEKFANVDITKEPIPILPTCHY 356
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH1 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27 Identity = 85/244 (34.84%), Postives = 124/244 (50.82%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALL-EAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G +R AD TG + L +A+ D + F +FA+DLLT + GV N E + RF + T++A+GG G Y S T+ TGDG AM RA + ++EFVQFHP+ + G LITE RG+GG L N ERFM Y +LA RDVV+R+I ++++ + + ++ L +SH P E + P I+ + G+D+T++PIP P HY Sbjct: 174 GAQAYRTCAVADRTGHALLHTLYGQALRHDTHF--FIEYFALDLLTH----NGEVVGVIAYNQEDGTIHRFRAHKTIIATGGYGRAYFSCTSAHTCTGDGNAMVSRAGFPLQDLEFVQFHPSGIYGSGC------------LITEGARGEGGFLVNSEGERFMERYAPTAKDLACRDVVSRAITMEIREGRGVGKKKDHMYLQLSHLPPEVLKERLPGISETAAIFAGVDVTKEPIPIIPTVHY 399
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27 Identity = 84/243 (34.57%), Postives = 119/243 (48.97%), Query Frame = 1 Query: 4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 G + R AAD TG I L + + + F +FAIDLL D C GV N++ + F + +LA+GG G Y S T+ TGDG M RA + +MEFVQFHPT + G LITE RG+GG L N ERFM Y +LA RDVV+R++ ++++ ++ +V L ++H E + P I+ + G+D+T+ PIP P HY Sbjct: 133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFIEYFAIDLLME----DGECRGVVAWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMVIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEILHRRLPGISETAKIFAGVDVTKDPIPVLPTVHY 358
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_ECOLI (Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3) HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27 Identity = 82/256 (32.03%), Postives = 120/256 (46.88%), Query Frame = 1 Query: 1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY------------DERSELAPRDVVARSIDDQLKKRNE------KYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711 GG R AAD TG + L + + P I F+ HF +D+L D G+ +N+ +V+ + ++A+GGAG +Y TN + TGDGM MA + +MEFVQ+HPT L G+ L+TE RG+GGIL N R++ Y ++ EL PRD V+++ + +K N V LD+ H +K+ P I Y G+D ++PIP P AHY Sbjct: 118 GGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD----DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGI------------LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHY 357
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_AQUAE (L-aspartate oxidase OS=Aquifex aeolicus GN=nadB PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.121e-26 Identity = 85/238 (35.71%), Postives = 122/238 (51.26%), Query Frame = 1 Query: 1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI-SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711 GGHS R++ D TGREI LL+ + I + ++ +GV + + ++FI + + +LA+GGA +Y T+NP GD + +A R A + N EFVQFHPT L + + LI+EAVRG+G IL N ERF+ +EL PRD VAR+I +Q+K+ E Y+ L + KI FP I + + G D R+P+P PAAHY Sbjct: 123 GGHSKPRVLKVKDYTGREIYTKLLKKT-EELGIKILHGELQEIIIEE--------NGVQGVIYSEEGSLKFIRTPLLILATGGAASMYYYTSNPKKVRGDAIGIAFRMGATVKNPEFVQFHPTVL------------KGTNLLISEAVRGEGAILVNDRGERFV------NELLPRDEVARAIYNQIKRGREVYLDLRPVAQKGIKIEERFPTIYSFLRERGYDPYREPVPIIPAAHY 333 The following BLAST results are available for this feature:
BLAST of FC876205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876205 ID=FC876205; Name=FC876205; organism=Citrus clementina; type=EST; length=712bpback to top |