FC876205

Overview
NameFC876205
Unique NameFC876205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_RICTY (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi GN=sdhA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26
Identity = 84/243 (34.57%), Postives = 118/243 (48.56%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G +  R   AAD TG  I   L +  +    +  F  +FAIDLL      D  C GV   N++   +  F +   +LA+GG G  Y S T+    TGDG  M  RA   + +MEFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+R++  ++++       + +V L ++H   E +    P I+     + G+D+T+ PIP  P  HY
Sbjct:  133 GKAAQRTCAAADRTGHAILHTLYQQSLKH-KVQFFIEYFAIDLLME----DGECRGVVAWNLDDGSLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMVIRAGLPLQDMEFVQFHPTGIYSAGC------------LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEYKDHVFLHLNHLSPEILHRRLPGISETAKIFAGVDVTKDPIPVLPTVHY 358          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_SULTO (L-aspartate oxidase OS=Sulfolobus tokodaii GN=nadB PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 82/237 (34.60%), Postives = 130/237 (54.85%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            GGH+  R++H  D TGREI   LL+ +  +  I + E     D L  +   D    G  T   E + +V  + K+ +LA+GG  ++Y  ++      GDGMA+A +A  ++++MEFVQFHPT  + +G            FL+TE +RG+G  + N   ERF+  YD+R ELAPRD+++R+I  ++ K ++  V +D+S    E     FP +A    ++G +  +  IP  PAAH+
Sbjct:  103 GGHTKRRVLHRTDETGREIFNFLLK-LAREEGIPIIE-----DRLVEIRVKDGKVTGFVT---EKRGLVEDVDKL-VLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDG----------EVFLLTETLRGEGAQIINENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK--VFIDLS--KIEDFERKFPVVAKYLARHGHNY-KVKIPIFPAAHF 314          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_PROVU (Fumarate reductase flavoprotein subunit OS=Proteus vulgaris GN=frdA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 81/256 (31.64%), Postives = 118/256 (46.09%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY------------DERSELAPRDVVARSIDDQ------LKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L +  +  P I  F+ HF +D+L      +    GV  +N+     V+  +   ++A+GGAG +Y   TN  + TGDGM +A R    + +MEFVQ+HPT L   G+            L+TE  RG+GGIL N    R++  Y            ++  EL PRD V+++   +      +K      V LD+ H   +K+    P I      Y G+D   +PIP  P AHY
Sbjct:  118 GGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD----EGHARGVVAINMMEGTKVQIRANAVIMATGGAGRVYRFNTNGGIVTGDGMGIALRHGVPLRDMEFVQYHPTGLPGSGI------------LMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGKPENKYMELGPRDKVSQAFWHEWRAGRTIKTHRGDVVHLDLRHLGAKKLHERLPFICELAKAYVGVDPVNEPIPVRPTAHY 357          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_CAUCR (L-aspartate oxidase OS=Caulobacter crescentus GN=nadB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.488e-26
Identity = 88/237 (37.13%), Postives = 119/237 (50.21%), Query Frame = 1
Query:    7 HSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDA-VCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            HS  R+     D  G  I  A++ AV + P I V E+  A  LL   +G    V   VD   VE +      S   +LA+GG G +Y  TT P    G+G+ +A  A A+I++ EFVQFHPTA+ D G        R+ + L TEA+RG+G IL N   + FM  Y    ELAPRDVVAR++    ++   +   LD +          FP +   C+  G+D  RQ IP  PA HY
Sbjct:  123 HSAARVARVGGDGAGAAIMAAVIAAVRATPGIEVRENARARRLLQDANGRVVGVLADVDGALVEIR------STAVILATGGVGGLYAVTTTPAQVRGEGLGLAALAGAMIADPEFVQFHPTAI-DIG--------RDPAPLATEALRGEGAILRNADGKAFMADYHPAKELAPRDVVARAL--HAERAAGRGAFLDATAAVGAHFPHEFPAVFEACMSAGIDPRRQMIPVTPAVHY 342          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_WOLSU (Fumarate reductase flavoprotein subunit OS=Wolinella succinogenes GN=frdA PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 82/246 (33.33%), Postives = 127/246 (51.63%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMA-HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            GG    R  + AD TG  +  A+    +    +S+ +   AI L+      D  C+G    ++ T +++ +++K TL+A+GG G IY +TTN +V  G G A+A     A + NME VQFHPT L   G+            L+TE  RGDGGIL ++   RFMP Y+ E+ ELA RDVV+R + + ++K         +++ LDIS    + I ++  ++   C  + G+D   +  P  P  HY
Sbjct:  142 GGTKKWRTCYTADATGHTMLFAVANECLK-LGVSIQDRKEAIALIHQ----DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHPTPLFPSGI------------LLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHY 370          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_HAEIN (Fumarate reductase flavoprotein subunit OS=Haemophilus influenzae GN=frdA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 77/257 (29.96%), Postives = 118/257 (45.91%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY------------DERSELAPRDVVARSIDDQLKKRNE-------KYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L +  +  P I  F+ HF +D+L      D    G+  +N+    +V+  +   ++A+GG    +   TN  + TGDG++MA+R    + +MEFVQ+HPT L + G+            L+TE  RG+GGIL N    R++  Y            ++  EL PRD V+++   + KK N          V LD+ H   + +    P I      Y G++   +PIP  P  HY
Sbjct:  118 GGMKIERTWFAADKTGFHLLHTLFQTSIQYPQIQRFDEHFVLDILVD----DGHARGMVAMNMMEGSLVQINANAVVIATGGGCRAFKFNTNGGIVTGDGLSMAYRHGVPLRDMEFVQYHPTGLPNTGI------------LMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIGKPQNKYMELGPRDKVSQAFWQEWKKGNTLKTAKGVDVVHLDLRHLGEKYLHERLPFICELASAYEGVNPVNEPIPVRPVVHY 358          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_MYCTU (Fumarate reductase flavoprotein subunit OS=Mycobacterium tuberculosis GN=frdA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 79/254 (31.10%), Postives = 119/254 (46.85%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD----------ERSELAPRDVVARSIDDQLKKRNE------KYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L + +++  ++  ++  FA  LL   DG   VC G+  + + T  +   ++   +L +GG G ++P TTN  + TGDGMA+A RA A + +MEFVQ+HPT L   G+            LITEA R +GG L N    R++  YD             EL PRD ++++   +  K           V LD+ H   + I +  P +   C  Y  +D   + +P  P  HY
Sbjct:  117 GGMKKLRTWFAADKTGFHLLHTLFQRLLTYSDVMRYDEWFATTLLVD-DG--RVC-GLVAIELATGRIETILADAVILCTGGCGRVFPFTTNANIKTGDGMALAFRAGAPLKDMEFVQYHPTGLPFTGI------------LITEAARAEGGWLLNKDGYRYLQDYDLGKPTPEPRLRSMELGPRDRLSQAFVHEHNKGRTVDTPYGPVVYLDLRHLGADLIDAKLPFVRELCRDYQHIDPVVELVPVRPVVHY 354          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_MYCBO (Fumarate reductase flavoprotein subunit OS=Mycobacterium bovis GN=frdA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 79/254 (31.10%), Postives = 119/254 (46.85%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD----------ERSELAPRDVVARSIDDQLKKRNE------KYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L + +++  ++  ++  FA  LL   DG   VC G+  + + T  +   ++   +L +GG G ++P TTN  + TGDGMA+A RA A + +MEFVQ+HPT L   G+            LITEA R +GG L N    R++  YD             EL PRD ++++   +  K           V LD+ H   + I +  P +   C  Y  +D   + +P  P  HY
Sbjct:  117 GGMKKLRTWFAADKTGFHLLHTLFQRLLTYSDVMRYDEWFATTLLVD-DG--RVC-GLVAIELATGRIETILADAVILCTGGCGRVFPFTTNANIKTGDGMALAFRAGAPLKDMEFVQYHPTGLPFTGI------------LITEAARAEGGWLLNKDGYRYLQDYDLGKPTPEPRLRSMELGPRDRLSQAFVHEHNKGRTVDTPYGPVVYLDLRHLGADLIDAKLPFVRELCRDYQHIDPVVELVPVRPVVHY 354          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_LISIN (L-aspartate oxidase OS=Listeria innocua GN=nadB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 79/239 (33.05%), Postives = 121/239 (50.63%), Query Frame = 1
Query:    1 GGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITR-QPIPCGPAAHY 711
            G H   RI+H+  D TG+ +   L E +     ++  E   AI+++      D    GV  L+ E Q +  +  +  +LASGG G ++P TTN    +GDG+A+A+RA A +S+MEF+QFHPT L   G             LI+EAVRG+G  L        M      ++LAPRDVVA ++ +++++ N+  V LDI+          FP I     ++ +     + IP  P AH+
Sbjct:  112 GAHQLPRILHSGGDQTGKFLTTFLQEKLTK---VNWQEQKMAIEIIKH----DGRAIGVHCLDKENQ-LHTYYGEHIILASGGLGQLFPVTTNAATISGDGLALAYRADATLSDMEFIQFHPTLLFLNG---------RCHGLISEAVRGEGATLIRADGSAIMETVHPLADLAPRDVVAATLFEEIERGNQ--VFLDIT--KVAHFEKRFPAITTSLDEHQVPFRETKRIPVHPGAHF 329          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_LISMO (L-aspartate oxidase OS=Listeria monocytogenes GN=nadB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 81/239 (33.89%), Postives = 120/239 (50.21%), Query Frame = 1
Query:    1 GGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITR-QPIPCGPAAHY 711
            G H   RI+H   D TG+ +   L E +    +I   E   AI+++   D    V H +D  N     +  +  +  +LASGG G ++P TTN    +GDG+A+A+RA A +++MEF+QFHPT L   G             LI+EAVRG+G  L        M     R++LAPRD+VA ++  +++  NE  V LDI+  P  +    FP I A    + +     + IP  P AH+
Sbjct:  112 GAHQLPRILHTGGDQTGKFLTTFLQEKLT---DIHWQEQKMAIEIIKQNDSAIGV-HCLDKEN----RLHTYYGEHIILASGGLGQLFPVTTNAATISGDGLALAYRAGAKLTDMEFIQFHPTLLFLNG---------RCHGLISEAVRGEGAKLIRADGSAIMTDVHPRADLAPRDIVAATLFAEIQDGNE--VFLDITAIPNFE--KRFPGITANLDAHHIPFRETKRIPVHPGAHF 329          
The following BLAST results are available for this feature:
BLAST of FC876205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DHSA_RICTY1.464e-2634.57Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
NADB_SULTO4.259e-2634.60L-aspartate oxidase OS=Sulfolobus tokodaii GN=nadB... [more]
FRDA_PROVU7.265e-2631.64Fumarate reductase flavoprotein subunit OS=Proteus... [more]
NADB_CAUCR9.488e-2637.13L-aspartate oxidase OS=Caulobacter crescentus GN=n... [more]
FRDA_WOLSU1.370e-2433.33Fumarate reductase flavoprotein subunit OS=Wolinel... [more]
FRDA_HAEIN3.986e-2429.96Fumarate reductase flavoprotein subunit OS=Haemoph... [more]
FRDA_MYCTU9.818e-2331.10Fumarate reductase flavoprotein subunit OS=Mycobac... [more]
FRDA_MYCBO9.818e-2331.10Fumarate reductase flavoprotein subunit OS=Mycobac... [more]
NADB_LISIN2.187e-2233.05L-aspartate oxidase OS=Listeria innocua GN=nadB PE... [more]
NADB_LISMO4.873e-2233.89L-aspartate oxidase OS=Listeria monocytogenes GN=n... [more]

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Properties
Property NameValue
Genbank descriptionC32001F10EF DevOvary1 Citrus clementina cDNA clone C32001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876205 ID=FC876205; Name=FC876205; organism=Citrus clementina; type=EST; length=712bp
GGGGGACACTCCCATCACAGAATCGTCCATGCTGCAGATATGACTGGAAG
GGAGATCGAGCGGGCTCTTTTGGAAGCTGTTGTCAGTGACCCTAATATCT
CAGTGTTCGAGCATCACTTTGCGATAGATTTGCTAACTACTCTGGATGGT
CCTGATGCAGTTTGTCACGGTGTTGACACTTTAAATGTTGAAACACAAGA
GGTGGTACGATTCATTTCAAAGGTGACCTTACTTGCATCAGGTGGAGCTG
GGCATATTTATCCATCGACAACAAATCCTCTGGTGGCCACTGGAGATGGG
ATGGCTATGGCCCACCGAGCTCAAGCAGTGATTTCAAACATGGAATTTGT
GCAGTTCCACCCAACTGCCTTAGCTGATGAGGGCCTTCCCATCAAACCAA
AGAAAACTCGAGAGAATTCATTTCTCATCACTGAAGCTGTCAGGGGTGAT
GGAGGCATCCTTTACAATTTAGGCATGGAACGGTTCATGCCCCTGTATGA
TGAGAGATCTGAGCTTGCTCCTAGGGATGTGGTGGCAAGAAGTATAGATG
ACCAGCTTAAAAAGCGTAATGAGAAGTATGTGCTCCTTGATATAAGTCAC
AGGCCCACGGAAAAAATACTGTCCCACTTTCCCAACATAGCTGCTGAATG
CCTTAAGTATGGACTGGACATAACCCGCCAGCCAATTCCCTGTGGTCCTG
CTGCACATTACA
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