FC876212

Overview
NameFC876212
Unique NameFC876212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: SPSJ_BACSU (Spore coat polysaccharide biosynthesis protein spsJ OS=Bacillus subtilis GN=spsJ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26
Identity = 68/173 (39.31%), Postives = 107/173 (61.85%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            K+ LITG AGFI       ++R   + +I VLDKL Y S+ + +   K +S F+FV+GDI+  + ++     E+ D ++HFAA++HVD S   +  F   N+ GT+ L EA  + G+ ++ IH+STDEVYG+   D      E + L P NPYSA+KA +++LV++Y +++ L
Sbjct:    3 KSYLITGGAGFIGLTFTKLMLRE-TDARITVLDKLTYASHPEEMEKLKQNSRFRFVKGDISVQEDID-RAFDETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAV-LKGKAKKLIHISTDEVYGDLKADDPAFT-ETTPLSPNNPYSASKASSDLLVLSYVKTHKL 171          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_SHIFL (dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 72/186 (38.71%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAYGRSYGL 670
            IL+TG AGFI S V   +I N  +  +V +DKL Y  NL++L     S  + F   DI  A  ++ +      D +MH AA++HVD S      F + NI GT+VLLEA +           +  RF H+STDEVYG+        N+EA  L        P++PYSA+KA ++ LV A+ R+YGL
Sbjct:    3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYAFEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDEKKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGL 187          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLX (dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 72/186 (38.71%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAYGRSYGL 670
            IL+TG AGFI S V   +I N  +  +V +DKL Y  NL++L     S  + F   DI  A+          +D +MH AA++HVD S      F + NI GT+VLLEA +           +  RF H+STDEVYG+      V ++E  QL        P++PYSA+KA ++ LV A+ R+YGL
Sbjct:    3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLAEISDSERYSFENADICDAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDDEKKKNFRFHHISTDEVYGDLPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGL 187          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RMLB_STRMU (dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans GN=rmlB PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.524e-26
Identity = 71/182 (39.01%), Postives = 107/182 (58.79%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETD-EDAVVGNHEA--------SQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            KNI++TG AGFI S+  + +  N+P+  + VLDKL Y  N  NL         + V GDIA ++LV+ L      D I+H+AA++H DNS  +   F   N  GT++LLEA +      RF HVSTDEVYG+    + + G+ E         ++  P++PYS+TKA ++++V A+ RS+G+
Sbjct:    5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANL-EEILGDRVELVVGDIADSELVDKL--AAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYD--IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSFGV 181          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_NEIGO (dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.113e-25
Identity = 75/190 (39.47%), Postives = 106/190 (55.79%), Query Frame = 2
Query:  134 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ--------IRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            M T   KNIL+TG AGFI S V   +I+N  +  +V LDKL Y  NL++L     +  + F + DI     ++ +      D +MH AA++HVD + G++ EF + NI GT  LLEA +   Q          RF H+STDEVYG+   TD+       E +   P++PYSA+KA A+ LV A+ R+Y L
Sbjct:    1 MQTEGKKNILVTGGAGFIGSAVVRHIIQNTRD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEKREAFRFHHISTDEVYGDLHGTDDLFT----ETTPYAPSSPYSASKAAADHLVRAWQRTYRL 185          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMA (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ--------IRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            + IL+TG AGFI S V   +IRN  +  +V LDKL Y  NL++L     +  + F + DI     ++ +      D +MH AA++HVD S G++ EF + NI GT  LLEA +   Q          RF H+STDEVYG+   TD+       E +   P++PYSA+KA ++ LV A+ R+YGL
Sbjct:    2 RKILVTGGAGFIGSAVVRHIIRNTQD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSEKHEAFRFHHISTDEVYGDLSGTDDLFT----ETAPYAPSSPYSASKASSDHLVRAWLRTYGL 180          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_SALTY (dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium GN=rfbB PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 70/186 (37.63%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK----VTGQIR----RFIHVSTDEVYGETDEDAVVGNH-------EASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            ILITG AGFI S V   +I+N  +  +V +DKL Y  NL++L     S+ + F   DI  +  +  +      D +MH AA++HVD S      F + NI GT+ LLE  +      G+ +    RF H+STDEVYG+      V N        E +   P++PYSA+KA ++ LV A+ R+YGL
Sbjct:    3 ILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGL 187          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMB (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ--------IRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            + IL+TG AGFI S V   +IRN  +  +V +DKL Y  NL++L     +  + F + DI     ++ +      D +MH AA++HVD S G++ EF + NI GT  LLEA +   Q          RF H+STDEVYG+   TD+       E +   P++PYSA+KA ++ LV A+ R+YGL
Sbjct:    2 RKILVTGGAGFIGSAVVRHIIRNTRD-AVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFT----ETAPYAPSSPYSASKASSDHLVRAWLRTYGL 180          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rfbB PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 71/186 (38.17%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR--------RFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAYGRSYGL 670
            IL+TG AGFI S V   +I N  +  +V +DKL Y  N ++L     S  + F   DI  A  +  +      D +MH AA++HVD S      F + NI GT+VLLEA +              RF H+STDEVYG+      V N E   L        P++PYSA+KA ++ LV A+ R+YGL
Sbjct:    3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNRESLADVSDSERYVFEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSDKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGL 187          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFFG_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rffG PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 73/184 (39.67%), Postives = 98/184 (53.26%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV--------TGQIRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            + ILITG AGFI S +  R I N     +VV+DKL Y  NL +L P   S  F F + DI     +  +      D +MH AA++HVD S      F + NI GT+ LLEA +              RF H+STDEVYG+   TD+       E +   P++PYSA+KA ++ LV A+ R+YGL
Sbjct:    2 RKILITGGAGFIGSALV-RYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT----ETTPYAPSSPYSASKASSDHLVRAWLRTYGL 180          
The following BLAST results are available for this feature:
BLAST of FC876212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
SPSJ_BACSU1.007e-2639.31Spore coat polysaccharide biosynthesis protein sps... [more]
RFBB_SHIFL2.929e-2638.71dTDP-glucose 4,6-dehydratase OS=Shigella flexneri ... [more]
RFBB_ECOLX2.929e-2638.71dTDP-glucose 4,6-dehydratase OS=Escherichia coli G... [more]
RMLB_STRMU6.524e-2639.01dTDP-glucose 4,6-dehydratase OS=Streptococcus muta... [more]
RFBB_NEIGO1.113e-2539.47dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrho... [more]
RFBB_NEIMA1.453e-2539.67dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
RFBB_SALTY9.421e-2537.63dTDP-glucose 4,6-dehydratase OS=Salmonella typhimu... [more]
RFBB_NEIMB9.421e-2539.13dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
RFBB_ECOLI9.421e-2538.17dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]
RFFG_ECOLI2.099e-2439.67dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC32001G06EF DevOvary1 Citrus clementina cDNA clone C32001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876212 ID=FC876212; Name=FC876212; organism=Citrus clementina; type=EST; length=670bp
GCTCACTCTTCAAAAGATCACCGCGGTTTCTTCTCAGTTTCCATTTTCAC
ACAGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCT
TCGTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCC
GAAGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTAT
GCAACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGAC
AAGCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATC
CTCCAACTTTAAGTTTGTTAGGGGGGACATTGCCAGTGCTGACCTTGTCA
ACTTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCG
CAAACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAA
CAATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGC
AGATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACT
GACGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAAC
AAATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTT
ATGGTAGGTCATATGGGCTA
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