FC876212
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23 Identity = 67/182 (36.81%), Postives = 99/182 (54.40%), Query Frame = 2 Query: 155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGE--TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670 NIL+TG +GFI S + R I N+ + ++ +DKL Y +N L + + + F + DI +++ + D +MH AA++HVD S + +F + NI GT+ LLE K RF H+STDEVYG+ E A E S P++PYSA+KA + LV A+ R+YGL Sbjct: 3 NILVTGGSGFIGSALI-RYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSLSEPAFT---EQSPYHPSSPYSASKAASNHLVQAWHRTYGL 180
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_RHISN (Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22 Identity = 65/179 (36.31%), Postives = 97/179 (54.19%), Query Frame = 2 Query: 158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV----TGQIR----RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670 IL+TG AGFI S + L+ E ++ +DKL Y NL +L P + N++F+R DI +N T D ++H AA++HVD S + +F + N+ GT +LE + Q R + +HVSTDEVYG + E S P++PYSA+KA ++ A+ R+YGL Sbjct: 3 ILVTGGAGFIGSALVRYLVSINAE--VLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGSLGDRGQF--EEVSPYDPSSPYSASKAASDHFATAWQRTYGL 177
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22 Identity = 66/178 (37.08%), Postives = 92/178 (51.69%), Query Frame = 2 Query: 161 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670 L+TG AGFI + + ++V LD L Y NL L + +++ FV+GDI LV LL D +++FAA++HVD S F + N+ GT LLEA + RF+HVSTDEVYG E E + P +PYSA+KA ++ LV A+ +YGL Sbjct: 5 LVTGGAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGL 178
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22 Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = 2 Query: 155 NILITGAAGFIASHVCNRLIR--NYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670 ++L+TGAAGFI S L+ P+ + LD L Y N NL + ++F RGDI A + D ++H AA++HVD S ++ F + N++GT LL+A G + F+ VSTDEVYG + + E L P +PYSA+KA ++L +A+ S+GL Sbjct: 4 HLLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDICDAPGRR---VMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHG-VASFVQVSTDEVYGSLEHGSWT---EDEPLRPNSPYSASKASGDLLALAHHVSHGL 170
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22 Identity = 66/178 (37.08%), Postives = 92/178 (51.69%), Query Frame = 2 Query: 161 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670 L+TG AGFI + + ++V LD L Y NL L + +++ FV+GDI LV LL D +++FAA++HVD S F + N+ GT LLEA + RF+HVSTDEVYG E E + P +PYSA+KA ++ LV A+ +YGL Sbjct: 5 LVTGRAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGL 178
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20 Identity = 66/178 (37.08%), Postives = 93/178 (52.25%), Query Frame = 2 Query: 158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD------YCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFE-FTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670 IL+TGAAGFI SH+C L+++ I + D + NLKNL+P K F F++ ++ +ADL + L E +D I H AA V +S+GN F + +NI LLEAC+ I+ F+ ST VYGE E + L P +PY TK E L Y +S+G+ Sbjct: 3 ILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEK---RFTFIKENLLTADLASLL---EGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACR-EHSIQTFVFASTSSVYGEKQGKV----SENTSLSPLSPYGVTKLTGEKLCHVYKQSFGI 169
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: YGAE_ERWAM (Uncharacterized protein in galE 3'region (Fragment) OS=Erwinia amylovora PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17 Identity = 58/166 (34.94%), Postives = 87/166 (52.41%), Query Frame = 2 Query: 158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV--------TGQIRRFIHVSTDEVYGET--DEDAVVGNHEASQLLPTNPYSATKA 625 IL+TG AGFI S V +I N + ++ +DKL Y NL++L + F + DI ++ + D +MH AA++HVD S F + N+ GT+VLLEA ++ + R H+STDEV+G+ ED E + P++PYSA+KA Sbjct: 3 ILVTGGAGFIGSAVIRHIINNTDD-TVLNIDKLTYAGNLESLQEISDNPRDHFSKTDICDSESLKRAFNDFEPDVVMHLAAESHVDRSIDGPAAFIETNMIGTYVLLEAARMYWLGLPVERKEAFRLHHISTDEVFGDLHGTEDLFT---EQTAYAPSSPYSASKA 164
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17 Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 2 Query: 158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670 IL+TG AG+I SH L+ + ++VLD L + A S+ F GDI L++ + T SIDT++HFAA + V S E+ +NN+ GTH LL+ + +++ + ST YGE + + E+ +PTNPY TK E + +YGL Sbjct: 3 ILVTGGAGYIGSHTVLFLLEQGEQ--VIVLDNLQKGH-------AGALSDVTFYHGDIRDDQLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKK-MLEHDVKKIVFSSTAATYGEPVQIPI---QESDPTIPTNPYGETKLAIEKMFHWCQEAYGL 160
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15 Identity = 57/171 (33.33%), Postives = 88/171 (51.46%), Query Frame = 2 Query: 161 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITE-SIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670 L+TG AG++ S V L+ E +VVL L + + +P+ AS F RGDI D + + S D ++HFAA + V S ++ NN+ GT LLEA + G +RR + ST YGE ++ +V E++ PTNPY A+K + ++ ++GL Sbjct: 6 LVTGGAGYVGSVVAQHLVEAGNE--VVVLHNLS--TGFRAGVPAGAS----FYRGDIRDQDFMRKVFRGRLSFDGVLHFAAFSQVGESVVKPEKYWDNNVGGTMALLEAMRGAG-VRRLVFSSTAATYGEPEQVPIV---ESAPTRPTNPYGASKLAVDHMITGEAAAHGL 164
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14 Identity = 50/174 (28.74%), Postives = 89/174 (51.15%), Query Frame = 2 Query: 155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 661 ++L+TG AG+I SH RL+++ Y++ ++D L L+ L P +F+ D+ A V+ + + D +MHFAA +V S + ++ N T V+LEA ++++ I+ ST YGE D+ +V E + +P NPY K AE +++ + ++ Sbjct: 71 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNLGAVKVLQGLFPEPG--RLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAV-ARHKVKKLIYSSTCATYGEPDKMPIV---EVTPQVPINPYGKAKKMAEDMILDFSKN 236 The following BLAST results are available for this feature:
BLAST of FC876212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876212 ID=FC876212; Name=FC876212; organism=Citrus clementina; type=EST; length=670bpback to top |