FC876215

Overview
NameFC876215
Unique NameFC876215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:7..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.913e-56
Identity = 112/207 (54.11%), Postives = 137/207 (66.18%), Query Frame = 3
Query:   99 SAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            SA  CGS   G  CP G CCS+FGWCG T D+C  G CQS C     G   P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    KY+GRGPIQ++ N +Y  CG  +  G D ++NPDL+
Sbjct:   22 SAEQCGSQAGGARCPSGLCCSKFGWCGNTNDYCGPGNCQSQCP----GGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLV 221          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.888e-55
Identity = 109/210 (51.90%), Postives = 137/210 (65.24%), Query Frame = 3
Query:  102 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELG-----KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            A  CGS   G +CP   CCS +GWCG T D+C DGCQS C+   CG      G  G GG  G      ++S+E+FE LL +RND  CPAR FYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYCF  E+GA +S YC P+  +PC    KY+GRGPIQL++N +Y   GE +  GED ++NP+L+
Sbjct:   23 AEQCGSQAGGALCPNCLCCSSYGWCGSTSDYCGDGCQSQCDG--CGGGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATAS-YCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAI--GEDLLNNPELV 227          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.494e-55
Identity = 110/207 (53.14%), Postives = 135/207 (65.22%), Query Frame = 3
Query:   99 SAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            SA  CGS   G  C  G CCS+FGWCG T D+C  G CQS C         P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    KY+GRGPIQ++ N +Y  CG  +  G D ++NPDL+
Sbjct:   22 SAEQCGSQAGGARCASGLCCSKFGWCGNTNDYCGPGNCQSQC---------PGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLV 216          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.494e-55
Identity = 110/206 (53.40%), Postives = 134/206 (65.05%), Query Frame = 3
Query:  102 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECD-PDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            A  CG+   G  CP   CCSR+GWCG T D C DGCQS C+   CG    P   +  DG  +G I+ R++FE LL +RND  CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF +E     SDYC P+  +PC    KYYGRGPIQL++N +Y   G  +  G D + NPDL+
Sbjct:   32 AEQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSG--CGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQN-PPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAI--GVDLLSNPDLV 230          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 9.372e-55
Identity = 106/207 (51.21%), Postives = 130/207 (62.80%), Query Frame = 3
Query:  102 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            A  CGS   G VCP   CCS+FGWCG T D+C  GCQS C+   CG   P   +   G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E  GAA  DYC  +  +PC    KYYGRGPIQL++N +Y   G+ +  G D + +PDL+
Sbjct:   21 AEQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAI--GADLLGDPDLV 225          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.088e-54
Identity = 109/207 (52.66%), Postives = 134/207 (64.73%), Query Frame = 3
Query:  102 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDDGTA-GDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            A NCGS   G  C  G+CCS+FGWCG T D+C  G CQS C         P  G   G GG+LG  IS  MF+ +L++RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC    KY+GRGPIQ++ N +Y  CG  +  G D ++NPDL+
Sbjct:   26 AQNCGSQGGGKACASGQCCSKFGWCGNTNDYCGSGNCQSQC---------PGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERG-NPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLV 220          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.651e-54
Identity = 100/206 (48.54%), Postives = 130/206 (63.11%), Query Frame = 3
Query:   93 GGSAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYC--DPNYPCRG--KYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            G   G+   G +CP   CCS++GWCG T  +C  GCQS C+   CG   P   + G G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E  G   SDYC     +PC    KYYGRGPIQ+++N +Y   G+ +  G + + NPDL+
Sbjct:   20 GEQCGSQAGGALCPNCLCCSQYGWCGSTSAYCGSGCQSQCSGS-CGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAI--GSNLLSNPDLV 222          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.353e-53
Identity = 105/207 (50.72%), Postives = 132/207 (63.77%), Query Frame = 3
Query:   93 GGSAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP-NYPCR--GKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            G  A  CGS   G VCP G CCS+FG+CG T  +C DGCQS C         P   T G  G++G+++   +F+ +L+YRND RC    FYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYCF  E       YC P ++PC    KYYGRGPIQLT N +Y   G+ +   ED ++NPDLL
Sbjct:   20 GSKAEQCGSQAGGAVCPNGLCCSKFGFCGSTDPYCGDGCQSQCKSSPTPTI-PTPSTGG--GDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQN-TQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAI--KEDLINNPDLL 220          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.767e-53
Identity = 109/208 (52.40%), Postives = 134/208 (64.42%), Query Frame = 3
Query:   99 SAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            SA  CGS   G +C  G CCS+FGWCG T D+C  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ++ N +Y  CG  +  G D ++NPDL+
Sbjct:   17 SAEQCGSQAGGALCASGLCCSKFGWCGDTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLV 210          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53
Identity = 99/207 (47.83%), Postives = 131/207 (63.29%), Query Frame = 3
Query:   93 GGSAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECD--PDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD--PNYPCRG--KYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            G   G+   G +CP   CCS++GWCG T D+C  GCQS C+    G C   P   ++G G  +  IIS  +F+ +L +RND+ C A+ FYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYCF  E    +  YC+  P +PC    KYYGRGPIQ+T+N +Y   G+ +  G D ++NPDL+
Sbjct:   18 GEQCGSQAGGALCPNCLCCSQYGWCGSTSDYCGAGCQSQCS----GGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAI--GSDLLNNPDLV 218          
The following BLAST results are available for this feature:
BLAST of FC876215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_TOBAC2.913e-5654.11Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI9_ORYSJ1.888e-5551.90Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_TOBAC5.494e-5553.14Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_ORYSJ5.494e-5553.40Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ9.372e-5551.21Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_SOLTU2.088e-5452.66Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_ORYSJ4.651e-5448.54Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA1.353e-5350.72Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_SOLTU1.767e-5352.40Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_ORYSJ2.308e-5347.83Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC32001G11EF DevOvary1 Citrus clementina cDNA clone C32001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876215 ID=FC876215; Name=FC876215; organism=Citrus clementina; type=EST; length=696bp
AAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATT
GCGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTC
AGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTA
GTCGATTTGGTTGGTGTGGCCTAACAATAGACCACTGTTGTGACGGCTGC
CAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGG
GACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGT
TTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGC
TTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTT
TGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTT
TTGCCCAAACTTGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGT
GGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCTGCGTC
GTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGTC
GAGGTCCAATTCAACTCACTTGGAATTTACATTACTTACGGTGCGGAGAA
GGCCTAGGGCGAGGAGAGGACTTTGTTGACAATCCAGACCTTCTTG
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