FC876215
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25 Identity = 68/197 (34.52%), Postives = 99/197 (50.25%), Query Frame = 3 Query: 99 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLTWNLHYLRCGEGLG 659 +A NCG C G CCS++G+CG T +C GCQS C + G G AG G + +++ F + + + C + FYT +F+ AA+++ F N KREIAAFFA HET C+ E+ A+ DYCD + +PC+ KYYGRGP+Q++WN +Y G+ +G Sbjct: 26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIG 203
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = 3 Query: 273 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695 + +IS +FE +L +R FYTYDAFI AAK+FPAF +G+ +RKRE+AAF AQT HETTGGWP AP G Y E+G+ S Y+GRGPIQ+++N +Y G+ + G D + NPDL+ Sbjct: 1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNYNYGAAGKAI--GVDLLRNPDLV 111
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25 Identity = 73/201 (36.32%), Postives = 97/201 (48.26%), Query Frame = 3 Query: 99 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLTWNLHYLRCG-----EGLGRGE 668 SA NCG C G CCS++G+CG D+C GCQ Q C P + I++ + +++ + D C + FYT DAF+ A ++ FG G+E KREIAA FA HET +C+ E+ AS DYCD YPC Y+GRGPIQL+WN +Y G +GLG E Sbjct: 22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPE 196
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24 Identity = 77/213 (36.15%), Postives = 97/213 (45.54%), Query Frame = 3 Query: 102 AGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPD 689 A NCG C CCS FG+CG +C G NC C P GT G G + I+S+ F+ ++ + CP + FYT AF+ A P FGN G+ KREIAAFFA HETT C E G YCD + YPC KYYGRGP+QL+WN +Y G+ + G D + NP+ Sbjct: 27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAI--GFDGLGNPE 214
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.555e-24 Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 3 Query: 96 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 392 GSA CG +CPGG CCS +GWCG T+D+C DGCQS C+ G+ CD G GDG G L II + F+ LL++RND RC A FYTYDAFI AAK F Sbjct: 20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23 Identity = 67/189 (35.45%), Postives = 98/189 (51.85%), Query Frame = 3 Query: 144 CCSRFGWCGLTIDHCCDGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695 CCS+ G+CG + D+C GCQ+ G C DP +G DG I + F D + + CP + FYT F+EA A+P FG + RKREIAA+FA HET C+ E +++YC + YPC +Y+GRGP+QL+WN +Y+ G+ L D +++PD++ Sbjct: 11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKEL--HFDGLNDPDIV 174 The following BLAST results are available for this feature:
BLAST of FC876215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876215 ID=FC876215; Name=FC876215; organism=Citrus clementina; type=EST; length=696bpback to top |