FC876226

Overview
NameFC876226
Unique NameFC876226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876226_ssr13 microsatellite FC876226_ssr13:13..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:9..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 7.579e-54
Identity = 98/142 (69.01%), Postives = 109/142 (76.76%), Query Frame = 1
Query:   97 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            V   LF    A   G    G WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+EL+C      C PG  +I +TATNFCPPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPV
Sbjct:    6 VLFLLFLARQASAAGY---GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPG--SITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPV 142          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 7.579e-54
Identity = 98/142 (69.01%), Postives = 109/142 (76.76%), Query Frame = 1
Query:   97 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            V   LF    A   G    G WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+EL+C      C PG  +I +TATNFCPPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPV
Sbjct:    6 VLFLLFLARQASAAGY---GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPG--SITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPV 142          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 7.579e-54
Identity = 92/123 (74.80%), Postives = 106/123 (86.18%), Query Frame = 1
Query:  154 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            G W+  HATFYGG+DASGTMGGACGYGNL+SQGYG+ TAALSTALFN+G  CGACFEL+C  DP+WC PG  +I+++ATNFCPPNFA  +DNGGWCNPP  HFDLA P FL++AQYRAGIVPV
Sbjct:   30 GGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPG--SIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPV 150          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.913e-53
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 1
Query:  154 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            G WQ  HATFYGG DASGTMGGACGYGNLY QGYG NTAALSTALFNNGL+CGAC+E+KC  DP+WC      I +TATNFCPPN    +DNGGWCNPP  HFDLA P FL++AQYRAGIVPV
Sbjct:   28 GGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCL--GSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPV 148          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 8.380e-53
Identity = 93/127 (73.23%), Postives = 107/127 (84.25%), Query Frame = 1
Query:  151 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC---GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            GG W SAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFE++C   GG    C PG  ++++TATNFCPPN A PSD+GGWCNPPR HFD++ P+F ++A ++AGIVPV
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPG--SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPV 185          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.094e-52
Identity = 91/124 (73.39%), Postives = 103/124 (83.06%), Query Frame = 1
Query:  154 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD-PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            G WQ  HATFYGG DASGTMGGACGYGNLYSQGYG +TAALSTALFN GLSCG+C+EL+C GD  + C PG   + +TATNFCPPN+A PSD GGWCNPPR HFDLA P FL++A++ AGIVPV
Sbjct:   26 GQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPV 149          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.438e-52
Identity = 94/142 (66.20%), Postives = 112/142 (78.87%), Query Frame = 1
Query:   97 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            ++LSL      K    ++ G W +A ATFYGG+DASGTMGGACGYGNLYSQGYG NTAALSTALFN G SCGACF++KC  DP+WC  G   I +T TNFCPPNFAQ ++ GGWCNPP+ HFDLA P+FL++AQY+AG+VPV
Sbjct:    9 ISLSLMMMIMWKSVDGYSSG-WVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGG--TITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPV 147          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.159e-52
Identity = 95/133 (71.43%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  130 KIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            KI  V AG  W  AHATFYGGSDASGTMGGACGYGNLY+ GY  NTAALSTALFN+G SCG C+++ C     PQWC  G  +I ITATNFCPPNFAQ SDNGGWCNPPRPHFD+A P FL +A+Y+AGIVP+
Sbjct:   20 KISSVSAG--WLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGK-SITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPI 149          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 2.980e-50
Identity = 94/145 (64.83%), Postives = 106/145 (73.10%), Query Frame = 1
Query:   94 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            S A +  AT     P V A   WQ AHATFYGG+DASGTMGGACGYGNLYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV
Sbjct:   18 STAAANTATTTPTNP-VAAPTQWQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPV 160          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 5.084e-50
Identity = 91/153 (59.48%), Postives = 110/153 (71.90%), Query Frame = 1
Query:   70 LFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            +F ++ F S AL   A+   +    FA   W    ATFYGGSDASGTMGGACGYGNLY+QGYG  TAALSTALF++G SCG C+ L C    DP+WC  G  ++ +TATNFCPPN+A PSD+GGWCNPPRPHFD+A P + ++  YR GIVPV
Sbjct:    7 VFAVVAFVSYALLAAASTTVE---AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAG-ASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPV 155          
The following BLAST results are available for this feature:
BLAST of FC876226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EXPA4_ORYSJ7.579e-5469.01Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI7.579e-5469.01Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ARATH7.579e-5474.80Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA8_ARATH4.913e-5374.80Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA5_ORYSJ8.380e-5373.23Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ1.094e-5273.39Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP14_ARATH2.438e-5266.20Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP17_ARATH4.159e-5271.43Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP23_ORYSJ2.980e-5064.83Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ5.084e-5059.48Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC32002A07EF DevOvary1 Citrus clementina cDNA clone C32002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876226 ID=FC876226; Name=FC876226; organism=Citrus clementina; type=EST; length=522bp
ACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTCTCCCTCTC
TTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTTCTCAGTGG
CACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTGTCTTCGCC
GGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGCAGCGACGC
TTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTACAGCCAGG
GCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGC
TTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATG
GTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAACTTTTGCC
CCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCT
CGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTA
CCGCGCTGGTATCGTCCCCGTT
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