FC876226

Overview
NameFC876226
Unique NameFC876226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876226_ssr13 microsatellite FC876226_ssr13:13..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:9..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 1
Query:   79 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ 498
            ++ F ++A  +  ++ A +        W    AT+YG ++ SGT GGACGY G++    +    AA S +++ +G  CG+C+++KC G+P  C+ G P + +  T+ CP         GG C     HFDL+   F  +A+
Sbjct:   11 IVAFVALACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CS-GKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAK 139          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAG 510
            W+ A AT+YG ++  G+ GGACGYG+L           ++S  LF +G  CGAC+++KC  D   C+    A+ +  T+ CP         GG C   R HFDL+   F ++A   AG
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKC-LDHGICS--RRAVTVIVTDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAG 153          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 495
            W +  AT+YG ++ +G+ GGACGY G ++   +    AA S +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMA 137          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.495e-12
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  151 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAG 510
            G  W S  AT+YGG    G+ GGACGY +   Q  +    AA   +LF NG  CG+C+++KC G+ + C+ G P + +  T+ CP         GG C     HFD++   F  +A    G
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACS-GRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMG 150          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 495
            W +  AT+YG ++ +G+ GGACGY     Q  +    AA S +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMA 137          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 43/134 (32.09%), Postives = 64/134 (47.76%), Query Frame = 1
Query:   97 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 495
            +  S  AT N  +    +   W  A AT+YG  +  G+ GGACGYG L   +       A++  LF NG  CGAC++++C  D   C+    A+ +  T+ CP            C+    HFDL+  +F +LA
Sbjct:   19 IGSSALATTNRHV----SNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICS--RRAVTVIITDECP-----------GCSKTSTHFDLSGAVFGRLA 134          
The following BLAST results are available for this feature:
BLAST of FC876226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EXB14_ORYSJ1.446e-1231.21Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB17_ORYSJ1.889e-1236.44Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB15_ORYSJ4.207e-1235.40Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ5.495e-1235.54Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB18_ORYSJ1.224e-1135.40Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ARATH7.935e-1132.09Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002A07EF DevOvary1 Citrus clementina cDNA clone C32002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876226 ID=FC876226; Name=FC876226; organism=Citrus clementina; type=EST; length=522bp
ACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTCTCCCTCTC
TTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTTCTCAGTGG
CACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTGTCTTCGCC
GGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGCAGCGACGC
TTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTACAGCCAGG
GCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGC
TTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATG
GTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAACTTTTGCC
CCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCT
CGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTA
CCGCGCTGGTATCGTCCCCGTT
back to top