FC876228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13 Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLIS-----NFTRTPLPKPQ 377 P++ CPISL++M DPVI++SG T++R I++W GH TCP T+ LP SL PN+ ++ LI+ N T+ P P+ Sbjct: 273 PEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLP-HISLTPNNCVKGLIASWCEQNGTQIPSGPPE 352
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13 Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT-----PLPKPQLEHANPNPQTLISVLTSKS 434 P DF C +SLE+M+DPVI++SG TF+R IQ+W+D G CP T+ L +L PN +R+ ++++ T P P + + P P + SV S S Sbjct: 241 PSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQAL-SHTTLTPNFIVRAFLASWCETNNVYPPDPLELIHSSEPFPLLVESVRASSS 339
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13 Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 3 Query: 126 KVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLI 341 K D+ P F CPISL++M PV L +G T+DRASIQRWLD G+ TCP T + + IPN L+ LI Sbjct: 3 KDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPAT-MQILQNKDFIPNRTLQRLI 73
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13 Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 3 Query: 153 DDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 356 DD CPISLEIMSDPV+L SGHT+DR+SI +W SG+ TCP T L L+ N +++ +I ++++ Sbjct: 280 DDLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLV-STVLVDNFSVKQVIQSYSK 346
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB24_ARATH (U-box domain-containing protein 24 OS=Arabidopsis thaliana GN=PUB24 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13 Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3 Query: 144 QFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 + P+ F CPISLEIM DPV SG T+DR +I +WL+ +CP+TK PLP L PNH LR LI ++ Sbjct: 9 EIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEK-VPSCPVTKQPLPLDSDLTPNHMLRRLIQHW 76
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12 Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 P++ CPISL++M DPVI++SG T++R I++W GH +CP T+ LP SL PN+ ++ LI+++ Sbjct: 276 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLP-HLSLTPNYCVKGLIASW 341
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.249e-12 Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 105 SCVRDRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 SC +R M+ P++ CPISL++M DPVI++SG T++R I++W GH TCP T L L PN+ +++LIS++ Sbjct: 266 SCNNNRRSSQMSVP-PEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQL-SHLCLTPNYCVKALISSW 345
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.249e-12 Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 3 Query: 141 TQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFT 353 T P F CPISL++M PV LS+G T+DR SIQRWLD G+ TCP T + + +PN L LI +++ Sbjct: 9 TTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPAT-MQILQNKEFVPNLTLHRLIDHWS 78
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12 Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLIS 344 P F CPISL++M PV L +G T+DRASIQRWLD G+ TCP T + L +PN L+ LI+ Sbjct: 13 PSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPAT-MQLLKTKDFVPNLTLQRLIN 76
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12 Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3 Query: 153 DDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 359 +D CPISLEIM+DPV++ +GHT+DR+SI +W SG+ TCPIT L L+ N ++R +I +T Sbjct: 290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKIL-TSTELVDNVSVRQVIRKHCKT 357 The following BLAST results are available for this feature:
BLAST of FC876228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876228 ID=FC876228; Name=FC876228; organism=Citrus clementina; type=EST; length=459bpback to top |