FC876228

Overview
NameFC876228
Unique NameFC876228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLIS-----NFTRTPLPKPQ 377
            P++  CPISL++M DPVI++SG T++R  I++W   GH TCP T+  LP   SL PN+ ++ LI+     N T+ P   P+
Sbjct:  273 PEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLP-HISLTPNNCVKGLIASWCEQNGTQIPSGPPE 352          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT-----PLPKPQLEHANPNPQTLISVLTSKS 434
            P DF C +SLE+M+DPVI++SG TF+R  IQ+W+D G   CP T+  L    +L PN  +R+ ++++  T     P P   +  + P P  + SV  S S
Sbjct:  241 PSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQAL-SHTTLTPNFIVRAFLASWCETNNVYPPDPLELIHSSEPFPLLVESVRASSS 339          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  126 KVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLI 341
            K D+    P  F CPISL++M  PV L +G T+DRASIQRWLD G+ TCP T + +      IPN  L+ LI
Sbjct:    3 KDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPAT-MQILQNKDFIPNRTLQRLI 73          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  153 DDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 356
            DD  CPISLEIMSDPV+L SGHT+DR+SI +W  SG+ TCP T   L     L+ N +++ +I ++++
Sbjct:  280 DDLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLV-STVLVDNFSVKQVIQSYSK 346          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB24_ARATH (U-box domain-containing protein 24 OS=Arabidopsis thaliana GN=PUB24 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  144 QFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350
            + P+ F CPISLEIM DPV   SG T+DR +I +WL+    +CP+TK PLP    L PNH LR LI ++
Sbjct:    9 EIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEK-VPSCPVTKQPLPLDSDLTPNHMLRRLIQHW 76          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350
            P++  CPISL++M DPVI++SG T++R  I++W   GH +CP T+  LP   SL PN+ ++ LI+++
Sbjct:  276 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLP-HLSLTPNYCVKGLIASW 341          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.249e-12
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  105 SCVRDRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350
            SC  +R    M+   P++  CPISL++M DPVI++SG T++R  I++W   GH TCP T   L     L PN+ +++LIS++
Sbjct:  266 SCNNNRRSSQMSVP-PEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQL-SHLCLTPNYCVKALISSW 345          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.249e-12
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  141 TQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFT 353
            T  P  F CPISL++M  PV LS+G T+DR SIQRWLD G+ TCP T + +      +PN  L  LI +++
Sbjct:    9 TTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPAT-MQILQNKEFVPNLTLHRLIDHWS 78          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLIS 344
            P  F CPISL++M  PV L +G T+DRASIQRWLD G+ TCP T + L      +PN  L+ LI+
Sbjct:   13 PSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPAT-MQLLKTKDFVPNLTLQRLIN 76          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  153 DDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 359
            +D  CPISLEIM+DPV++ +GHT+DR+SI +W  SG+ TCPIT   L     L+ N ++R +I    +T
Sbjct:  290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKIL-TSTELVDNVSVRQVIRKHCKT 357          
The following BLAST results are available for this feature:
BLAST of FC876228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PUB7_ARATH2.656e-1343.21U-box domain-containing protein 7 OS=Arabidopsis t... [more]
PUB2_ARATH3.469e-1339.00U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB27_ARATH3.469e-1350.00U-box domain-containing protein 27 OS=Arabidopsis ... [more]
PUB19_ARATH5.917e-1350.00U-box domain-containing protein 19 OS=Arabidopsis ... [more]
PUB24_ARATH7.728e-1352.17U-box domain-containing protein 24 OS=Arabidopsis ... [more]
PUB6_ARATH1.009e-1244.78U-box domain-containing protein 6 OS=Arabidopsis t... [more]
PUB45_ARATH2.249e-1241.46U-box domain-containing protein 45 OS=Arabidopsis ... [more]
PUB28_ARATH2.249e-1247.89U-box domain-containing protein 28 OS=Arabidopsis ... [more]
PUB29_ARATH5.009e-1252.31U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB18_ARATH5.009e-1247.83U-box domain-containing protein 18 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32002A09EF DevOvary1 Citrus clementina cDNA clone C32002A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876228 ID=FC876228; Name=FC876228; organism=Citrus clementina; type=EST; length=459bp
AGATAGGGGTCCTGCATTTGCTGGACAGATAGATGAAACTGAAAATCTCA
TAGGCAGCAGCAGCGGCAGCAGTTTCCAAAAACCTCATAAACCCCTCTCG
AGTTAGCTGTGTTCGAGACCGAGTCAAAGTAGATATGGCGACTCAGTTCC
CGGACGATTTCAATTGTCCGATTTCTCTAGAAATAATGTCCGACCCGGTC
ATACTCTCCTCTGGCCACACCTTTGACCGAGCGTCAATCCAACGGTGGCT
GGACTCCGGTCACCGTACTTGTCCAATTACTAAACTACCCCTCCCTGACC
AACCCTCTCTTATCCCCAACCACGCTCTGAGATCTTTAATTTCCAATTTT
ACCCGCACCCCATTACCGAAACCACAGCTCGAACACGCAAACCCGAACCC
ACAAACCCTAATCTCCGTGCTCACATCAAAATCTTCCCCTCTCGAGTCCA
AACTCGAGT
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