FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:404..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 8.430e-46
Identity = 97/166 (58.43%), Postives = 122/166 (73.49%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL AG N+ LL +Q++R +P++VA+ +E+LL E+K+ L  ++        PE++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q
Sbjct:    2 KAISVLGSTGSIGTQTLQIVDDFPDQFRVVALTAGRNLALLVEQIQRHQPELVALADEALLPELKQRLEALDPSDRPAQCPEMVGGPDGLEVAASWGSAELVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQ 167          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9605) GN=dxr PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.203e-45
Identity = 97/164 (59.15%), Postives = 119/164 (72.56%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K ISVLGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL +QV+R +P+VVA+ +  LL E++E L +      + P+++ G  G+  AA    A  VVTGIVGCAGL PT+AAI AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFRVVALTAGRNLKLLVEQVQRHRPEVVALADSDLLPELQERLKDAGVTGADAPQLVGGADGLNVAAAWDSADLVVTGIVGCAGLLPTLAAIRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQ 165          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL1A) GN=dxr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.184e-45
Identity = 95/166 (57.23%), Postives = 121/166 (72.89%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K ISVLGSTGSIGTQTL I  E  D+F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+Q
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPDQFKIVALTAGKNLDLVTKQIETHQPEVVSLADESLLPELTRRINSLNEDSKILKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQ 167          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNS3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=dxr PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.217e-44
Identity = 96/166 (57.83%), Postives = 121/166 (72.89%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV------EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL+AG N++LL  Q++R +P VVA+ +++LL E+K+ L  +      E  P ++ G +G+   A    A  VVTGIVGCAGL PT+AAI AGKD+A+ANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q
Sbjct:    2 KAISVLGSTGSIGTQTLAIVEDFPDQFRVVALSAGRNLSLLVSQIQRHRPDVVALADQALLAELKDRLMALPADTRPEPLPHLVGGPEGLDVVASWDSADLVVTGIVGCAGLLPTLAAIRAGKDLAVANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQ 167          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROMT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL2A) GN=dxr PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.217e-44
Identity = 94/166 (56.63%), Postives = 121/166 (72.89%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K ISVLGSTGSIGTQTL I  E  ++F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+Q
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFKIVALTAGKNLDLVIKQIETHQPEVVSLADESLLSELSSRINSLTENKKIVKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQ 167          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxr PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.542e-44
Identity = 91/158 (57.59%), Postives = 119/158 (75.32%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            +LGSTGSIGTQTL+IV+E  DKF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+AGK+IALANKETLIA G  V+P   +   ++LPADSEHSAIFQCIQ
Sbjct:    1 MLGSTGSIGTQTLEIVSELPDKFKVVALSAGRNIDLLTEQVSQHKPEVIAIEDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKAGKNIALANKETLIAAGSVVIPALKESKSRLLPADSEHSAIFQCIQ 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROM5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxr PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 7.890e-44
Identity = 92/162 (56.79%), Postives = 121/162 (74.69%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I+VLGSTGSIGTQTL+IV E  +KF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+A K+IALANKETLIA G  V+P   ++  ++LPADSEHSAIFQCIQ
Sbjct:    2 KYITVLGSTGSIGTQTLEIVRELPNKFKVVALSAGRNIDLLTEQVSQHKPEVIAIDDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKASKNIALANKETLIAAGSVVIPALKENKSRLLPADSEHSAIFQCIQ 163          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.296e-43
Identity = 91/159 (57.23%), Postives = 116/159 (72.96%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE---ALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            +LGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL  Q++R +P++VA+ N  LL E+++   AL    ++P+++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q
Sbjct:    1 MLGSTGSIGTQTLQIAEEFPEQFRVVALTAGQNLDLLVQQIQRHQPELVALANADLLPELQQRLDALGTDRKRPQLVGGPDGLNIAASWESADLVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQ 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.916e-43
Identity = 91/162 (56.17%), Postives = 121/162 (74.69%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            +LGSTGSIGTQTL+I  E  ++FRVVAL AG+N++L+ +Q++R  P+VVA+ + SLL E+K+ L  +  +      P++LAG +G+  AA    A  VV+GIVGCAGL PT+AAI+AGKD+ALANKETLIA  P VLP   +   ++LPADSEHSAIFQC+Q
Sbjct:    1 MLGSTGSIGTQTLEIAEEFPERFRVVALTAGTNVSLVVEQIQRHHPEVVALADASLLPELKQQLNALPSEQQPPHLPQLLAGPEGLNVAASWDSADLVVSGIVGCAGLLPTLAAIKAGKDLALANKETLIAAAPVVLPELKRSGSRLLPADSEHSAIFQCLQ 162          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOUR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter uraniireducens (strain Rf4) GN=dxr PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.538e-42
Identity = 88/160 (55.00%), Postives = 113/160 (70.62%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +++LGSTGSIG  TLDIVA H DKF+VVAL AG N+ LL  Q++ F PQ+VAV NE L  ++++ L+   + P IL G +G+I AA   DA  VV  IVG AGL PT AAI+AGKDIALANKETL+  G  ++ +   H +K+ P DSEHSA+FQ +Q
Sbjct:    2 KKLAILGSTGSIGVSTLDIVAAHPDKFQVVALTAGGNLDLLKKQIEEFSPQLVAVLNEELAQKLQQMLSG--KGPAILHGVEGMIAAATAADADMVVAAIVGAAGLVPTAAAIKAGKDIALANKETLVTAGRLIMDMVKAHGVKLYPVDSEHSAVFQSLQ 159          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_SYNS98.430e-4658.431-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNSC3.203e-4559.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM14.184e-4557.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS31.217e-4457.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMT1.217e-4456.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMP3.542e-4457.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM57.890e-4456.791-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX2.296e-4357.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMM3.916e-4356.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOUR2.538e-4255.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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