FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus GN=dxr PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.645e-41
Identity = 90/162 (55.56%), Postives = 117/162 (72.22%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            +LGSTGSIGTQTL+I  E  ++F+VVAL AG N+ LL  Q++  +P+VVA+  + +L E++E L ++  K      P ++AG  G+  AA    A  VVTGIVGCAGL PT+AAI+AGKDIALANKETLIA GP V+P   +   ++LPADSEHSAIFQC+Q
Sbjct:    1 MLGSTGSIGTQTLEIAKECPEQFKVVALTAGRNLDLLIKQIQEHQPEVVALARKDILPELQERLNSLTGKERPNALPHLVAGNDGLNIAASWHSADLVVTGIVGCAGLLPTLAAIKAGKDIALANKETLIAAGPVVIPELKRSGSRLLPADSEHSAIFQCLQ 162          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CHLT3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=dxr PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.665e-41
Identity = 82/159 (51.57%), Postives = 114/159 (71.70%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K I++LGSTGSIGT +L++++   ++F    L+AGSN+ LLA+Q KRF+P+ V + NESL  E++  LA   E  EI++GE+G+ E +R  D   V+  +VG AGLKPTV A++AGKD+ LANKETL+ GG  +  L  +H  K+LP DSEHSAIFQC+
Sbjct:    2 KRITILGSTGSIGTNSLEVISRFPEQFCATYLSAGSNVKLLAEQAKRFRPKGVVIMNESLEGELRSLLAG--ESIEIMSGEEGLCEISRRSDTDFVIGSVVGFAGLKPTVEALKAGKDVGLANKETLVVGGEIITSLVEEHGCKMLPVDSEHSAIFQCL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BREBN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxr PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.252e-41
Identity = 83/160 (51.88%), Postives = 117/160 (73.12%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LGSTGS+GT TL++V +H + F VVA+AAG+NI LL  QV+ FKP++V+V NE    E+++ LA  + +PEI+ G +G+   ARH  A  V+T +VG  G+ PT+AAIEAGK I LANKETL++ GP V+  A +  + I+P DSEHSA++QC+Q
Sbjct:    2 KKIALLGSTGSVGTSTLEVVGQHPEDFSVVAMAAGTNIDLLTLQVETFKPELVSVGNEKAAVELRDRLAG-KSQPEIVYGAEGLELVARHEAANFVMTAVVGSVGVAPTLAAIEAGKTIGLANKETLVSAGPVVMKRAKEKGVSIIPVDSEHSAVYQCLQ 160          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BACHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus halodurans GN=dxr PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 5.292e-40
Identity = 85/161 (52.80%), Postives = 114/161 (70.81%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN-VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K ISVLG+TGSIGTQTLD++A H DKFR+VA++ G N+TL  +Q+ +FKP +V+V    + DE ++ LA+ V E   ++ GE+G+IE A    A  +V  ++G  GL PT+AAIEA K IALANKETL+  G  V   A +H +K+LP DSEHSAIFQ +Q
Sbjct:    2 KGISVLGATGSIGTQTLDVLANHRDKFRLVAMSVGKNLTLAEEQIHQFKPPLVSV----MTDEDRKTLASKVPEGTRVVCGEEGLIEVATAEKAEILVNAVIGSVGLAPTLAAIEAKKTIALANKETLVTAGHLVTEKAREHGVKLLPVDSEHSAIFQALQ 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOSL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sulfurreducens GN=dxr PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.027e-40
Identity = 83/160 (51.88%), Postives = 112/160 (70.00%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LGSTGSIG  TL++V+ H D+FRVVAL AG+N+ +L  Q++ F+PQ+V+V +E L  E+  +L     KPEI  G +G+I AA   DA  VV  IVG AGL PT AAI AGKD+ALANKETL+  G  ++ L    N+++ P DSEHSA+FQ ++
Sbjct:    2 KNITILGSTGSIGVSTLEVVSAHPDRFRVVALTAGNNLEMLRQQIETFRPQMVSVLSEKLAVELDRSLPGY--KPEIHYGVEGLIAAATAGDAHMVVAAIVGAAGLVPTAAAIRAGKDVALANKETLVTAGRLIMDLVRDKNVRLYPVDSEHSAVFQSME 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CHLTE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium tepidum GN=dxr PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.027e-40
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +S+LGSTGSIG  TLD+V  H ++F + ALA G ++ +L  Q+  F+P +V+VR+E+  + +K  L   + KPEIL G +G  E A    A  VV+ IVG AGL PTV AIEAGKDIALANKETL+  G  V  L  KH++K+LP DSEHSAIFQ +
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRRHPERFSIAALAEGHDVEMLLKQIDEFRPSLVSVRDEASRERLKGMLG--DHKPEILCGLEGAAEVAAVDGADMVVSAIVGAAGLVPTVRAIEAGKDIALANKETLVVAGQLVSDLVKKHDVKLLPVDSEHSAIFQSL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_EUBE2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dxr PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.179e-39
Identity = 84/159 (52.83%), Postives = 116/159 (72.96%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +S+LGSTGSIGTQTLD++  + D   VVALAAG+ ++ LA+QV+ FKPQ+V +  E L+ E+K  + +++ K  I++G++G+IEAA    A  VVT +VG  G+ PTV AI+A KDIALANKETL+  G  ++ LA + N+ I P DSEHSAIFQC+
Sbjct:    2 KNVSILGSTGSIGTQTLDVIRRNAD-INVVALAAGTRVSDLAEQVREFKPQLVCIGKEELVPELKTLIGDMDVK--IVSGDEGLIEAATIESAEIVVTAVVGMMGITPTVEAIKAHKDIALANKETLVCAGHIIMSLAKECNVNIYPVDSEHSAIFQCL 157          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CHLPB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=dxr PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.430e-39
Identity = 83/159 (52.20%), Postives = 110/159 (69.18%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +S+LGSTGSIG  TLD+V +H +KF V  LA G +I LLA+Q+K F+P +V+VR+++    ++E L +  EKPEIL G +G         +  VV+ IVG AGL PTV+AI+AGKDIALANKETL+  G  V  L  +H + +LP DSEHSAIFQ +
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPEKFNVTGLAEGHDINLLAEQIKEFRPDIVSVRDKASAGLLREQLGS--EKPEILWGIEGAAAVGAAEGSEMVVSAIVGAAGLVPTVSAIKAGKDIALANKETLVVAGQLVSDLVKEHKVTLLPVDSEHSAIFQSL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYMTH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Symbiobacterium thermophilum GN=dxr PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.851e-39
Identity = 82/161 (50.93%), Postives = 111/161 (68.94%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV--EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K I++LGSTGSIGTQ LD++  H  +FRVVALAAG  +  LA+Q  RF+P +++V +      ++  L     + +PEI  G +G+I AA HP++  V+T +VG  G++PT+AAIEAGKDIALANKETL+A G  V   A    +K+LP DSEHSAIFQ +
Sbjct:    3 KGIAILGSTGSIGTQALDVIDHHPGRFRVVALAAGRQVERLAEQALRFRPALLSVADADAAAALRALLLAEAGDYRPEIAWGREGLIRAATHPESGLVLTSVVGAMGVEPTLAAIEAGKDIALANKETLVAAGELVTAAAQARGVKLLPVDSEHSAIFQSL 163          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dxr PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.851e-39
Identity = 80/159 (50.31%), Postives = 110/159 (69.18%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +S+LGSTGSIG  TLD+V +H D+F +  LA G ++TLLA+Q++ FKP +V+VR+E+  ++++E +   E  PEI  G +G         +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V  L  +H +++LP DSEHSAIFQ +
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPDRFTITGLAEGHDVTLLAEQIREFKPSIVSVRDEASANQLRELIG--ESGPEIRWGIEGAAVVGEADGSDMVVSAIVGAAGLVPTVRAIKAGKDIALANKETLVVAGQLVSELVREHKVQLLPVDSEHSAIFQSL 158          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_PROMA1.645e-4155.561-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLT33.665e-4151.571-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BREBN6.252e-4151.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACHD5.292e-4052.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSL9.027e-4051.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLTE9.027e-4052.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBE21.179e-3952.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLPB3.430e-3952.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYMTH5.851e-3950.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROA25.851e-3950.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
back to top