FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:404..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOSF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sp. (strain FRC-32) GN=dxr PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 9.981e-39
Identity = 82/160 (51.25%), Postives = 110/160 (68.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +++LGSTGSIG  TL+IVA H +KF+++AL AG NI LL +Q+  F PQ+VAV+NE L  +++  L+    K  ++ G +G+I AA   D   VV  IVG AGL PT AAIEAGKDIALANKETL+  G  ++ +     +K+ P DSEHSA+FQ +Q
Sbjct:    2 KNLTILGSTGSIGVSTLEIVAAHPEKFKIIALTAGENIDLLKEQIDAFAPQLVAVKNEELALKLEGMLSC--RKTAVMYGVEGMIAAATASDTNMVVAAIVGAAGLLPTSAAIEAGKDIALANKETLVTAGRLIMDMVKTRGVKLYPVDSEHSAVFQSLQ 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PELLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon luteolum (strain DSM 273) GN=dxr PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.702e-38
Identity = 80/160 (50.00%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + +S+LGSTGSIG  TLD+V +H D+F++V LA G ++ +LA+Q++ F P +V+VR+    + +K  L    + PEI  G +G    A    +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V  L  KHN+++LP DSEHSAIFQ +Q
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHPDRFKIVGLAEGHDVNMLAEQIREFNPSIVSVRDAGSAELLKTLLGT--DLPEICHGIEGAGTVAAAEGSDMVVSAIVGAAGLTPTVKAIKAGKDIALANKETLVVAGQLVSDLVKKHNVRLLPVDSEHSAIFQSLQ 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BACCQ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus cereus (strain Q1) GN=dxr PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.224e-38
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG++GSIGTQTLD++  H D+FR+VA +AG NI      ++ F PQ+V+V+ E   D +K  L  V    +++ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSAGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKVVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCL 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR2_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr2 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.224e-38
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG++GSIGTQTLD++  H D+FR+VA + G NI      ++ F PQ+V+V+ E   D +K  L +V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQSVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCL 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOMG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxr PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.904e-38
Identity = 81/160 (50.62%), Postives = 113/160 (70.62%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +++LGSTGSIGT TL+IVA H D+F+V+AL AGSN+ LL  QV+ F+P++V+V    L  ++   L+  + KPEI  G  G+I AA   +A  VV  IVG AGL PT AAI+AGKD+ALANKETL+  G  ++ L  ++ +++ P DSEHSA+FQ ++
Sbjct:    2 KKLTILGSTGSIGTSTLEIVAAHPDRFQVIALTAGSNLELLKQQVEVFRPRLVSVLTADLARQLDRMLS--DPKPEIHHGIPGLIAAATAGEADVVVAAIVGAAGLVPTAAAIKAGKDVALANKETLVTAGRIMMDLVRENGVRLYPVDSEHSAVFQSLE 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOLS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=dxr PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.904e-38
Identity = 81/160 (50.62%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LGSTGSIG  TL+IVA H DKFRV++L+   N+ LLA Q+++F+P++ AV + + +  +KE L+ VE   E+  G +G+  AA  P    VV  IVG AGL PT AAI AG D+ALANKETL+  G   + L  +H +K+ P DSEHSAIFQ I+
Sbjct:    2 KQIAILGSTGSIGVSTLEIVAAHPDKFRVLSLSGAKNLDLLARQIRQFRPRLAAVADPADIPRLKELLSGVEV--ELTGGVEGLCAAATAPGVQMVVAAIVGAAGLVPTAAAIRAGIDVALANKETLVTAGHLFMELVERHKVKLYPVDSEHSAIFQSIE 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOSW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacillus sp. (strain WCH70) GN=dxr PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.793e-38
Identity = 79/160 (49.38%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LG++GSIGTQTLDI+  H D+F++ A++ G N+ +    ++ F P++VAV      ++++   A    K +I+ GE+G+IEAA  P+   VVT +VG  GL PT+ AIEAGK IALANKETL+  G  V   A KH + +LP DSEHSAIFQC+Q
Sbjct:    2 KYISILGASGSIGTQTLDIIRSHPDEFQLTAISIGKNVDMARAIIEEFAPRLVAVAEADAYEKLRSEYAG---KVKIVFGEEGLIEAAAFPETDIVVTAVVGSVGLVPTLRAIEAGKTIALANKETLVTAGHIVTAAAKKHGVSLLPVDSEHSAIFQCLQ 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CHLL2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dxr PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.793e-38
Identity = 81/159 (50.94%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +S+LGSTGSIG  TLD+V +H  KF +  LA G ++ LL +Q+  F+P VV+VR+ +  D++++ L     KPEI  G +G    A    A  VV+ IVG AGL PTV+AI+AGK IALANKETL+  G  V  L  KHN+++LP DSEHSAIFQ +
Sbjct:    2 KALSILGSTGSIGLSTLDVVRQHPGKFTITGLAEGHDVGLLNEQINEFRPDVVSVRDAASADQLRKLLGT--HKPEIFYGIEGAATVAAAEGAEMVVSAIVGAAGLVPTVSAIKAGKHIALANKETLVVAGQLVSDLVKKHNVQLLPVDSEHSAIFQSL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BACC7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus cereus (strain AH187) GN=dxr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG++GSIGTQTLD++  H D+FR+VA + G NI      ++ F PQ+V+V+ E   D +K  L  V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCL 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BACC3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus cereus (strain 03BB102) GN=dxr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG++GSIGTQTLD++  H D+FR+VA + G NI      ++ F PQ+V+V+ E   D +K  L  V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCL 156          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_GEOSF9.981e-3951.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELLD1.702e-3850.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACCQ2.224e-3850.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR2_BACCR2.224e-3850.311-deoxy-D-xylulose 5-phosphate reductoisomerase 2 ... [more]
DXR_GEOMG2.904e-3850.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOLS2.904e-3850.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSW3.793e-3849.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLL23.793e-3850.941-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACC74.953e-3850.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACC34.953e-3850.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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