FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHESH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella sediminis (strain HAW-EB3) GN=dxr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 53/155 (34.19%), Postives = 88/155 (56.77%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            +LG+TGSIG+ TL ++  + D + V AL A +++  +    +  +PQ+  + +      +K+ L       EI  GE  +I+        +V+  IVG AGL PT+AA++AGK + LANKE+L+  G   +    +   ++LP DSEH+AI+Q +
Sbjct:    6 ILGATGSIGSSTLSVIESNPDAYSVYALVANTSVEKMLALCETHRPQIAHMVDGQAAKSLKQRLPT-SLNVEITTGEDQLIDIVSASCVDSVMAAIVGAAGLVPTLAAVKAGKRVLLANKESLVMSGRLFIDEMRRSGARVLPVDSEHNAIYQAL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_LEIXX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leifsonia xyli subsp. xyli GN=dxr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 65/158 (41.14%), Postives = 89/158 (56.33%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + +LGSTGSIG Q L++VA + D+F+VV L AGS+   LA+Q +RF      VR  +L     E L                    R  DA  V+ GI G  GL PT+AA+E+G+ +ALANKE+LI GG  V   A     +++P DSEHSA+ Q ++
Sbjct:    6 VVILGSTGSIGMQALEVVAANPDRFQVVGLTAGSSAGQLAEQAERF-----GVRETALGAGDSERL-------------------VRSVDADVVLNGITGSVGLGPTLAALESGRTLALANKESLIVGGELVKRAAAPG--QLIPVDSEHSALAQALR 137          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOBA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopirellula baltica GN=dxr PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.186e-21
Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIV-----AEHEDKFRVVALAAGSNITLLADQVK--RFKPQVVAVRNESLLDEIKEAL--------ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            ++VLG+TGSIG   LD++      + +  + V +++  S I  L +        P+ V V +  +  +  +AL        + + E+  +  G   ++ AA   D   VV  IVG AGL+ T+AA+ AGK +ALANKETL+  GP V   A  +  ++LP DSEHSAIFQC+
Sbjct:   24 VAVLGATGSIGVAALDVIENLNRCDPDFAWEVSSMSGHSQIDPLIELAGGCHTPPKCVVVSDAEMEAQAAKALRTASTQTSSRLTERCRLDVGPDALVRAATENDVDVVVAAIVGRAGLESTLAAVHAGKRVALANKETLVVAGPVVTRAAANNGAQLLPVDSEHSAIFQCL 195          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_WOLSU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Wolinella succinogenes GN=dxr PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.385e-21
Identity = 55/152 (36.18%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIF 477
            +LGSTGSIG   L +  +   +  V  L AG N++LL  Q+  F+P+++ + + S   E+     ++ +  ++L GE+G+IE+     +  V+  +VG  GL+PT+ ++  GK +ALANKE+L+AGG FV         KI+P DSEH +++
Sbjct:    3 LLGSTGSIGQNALSLARDF--RLPVEVLVAGHNLSLLNAQIAEFQPKIIVIADSSRASEL-----SLPKDSKLLFGEEGIIESLHLAQSSFVLNALVGFLGLRPTLESLRLGKTLALANKESLVAGGSFV------DASKIIPVDSEHFSLW 141          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_NAUPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=dxr PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIF 477
            VLGSTGSIG  TL+I   ++    +  L AG+N  +L  Q+K FKP+ V V++    ++I        + P +  GE+ V++      +  +V  +VG AGL+PT+ A E GK IALANKE+L+  G F+         KI P DSEH  ++
Sbjct:    3 VLGSTGSIGVNTLEIARRYD--IEIEGLVAGNNYEVLNAQIKEFKPKYVVVKDLKTAEKI--------DFPNVKYGEEAVLDMIEKSKSDLIVNALVGDAGLRPTLKAQECGKKIALANKESLVNAGKFI------DTSKITPIDSEHFGLW 138          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PERMH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=dxr PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.566e-20
Identity = 64/159 (40.25%), Postives = 85/159 (53.46%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K ++VLGSTGSIGTQTLDIV ++ D+  V  LAA      L DQ+  FKP+ V +     +  +K            L GE G+ + A+  D    + GI G  G+ PT   +E  K +A ANKE +I  G        K++  I P DSEHSAIFQC+
Sbjct:    2 KRLAVLGSTGSIGTQTLDIVRKYRDRLEVSLLAASRVSEKLLDQIDEFKPEYVYIAEGEKIKGVK-----------TLIGEDGLYKLAQ-LDIDLFINGISGINGILPTYLLLENNKKLATANKEAIICLGEI---YGDKYS-DIFPIDSEHSAIFQCL 144          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SULSY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=dxr PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.355e-19
Identity = 61/160 (38.12%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + +LGSTGS+G+Q LD++ +++D+ +V  L A      L +Q+K FKP  V V N  E  +D+IK           +L GE G +  A + D    +  I G  G+ PT   ++  K +A ANKE +I  G     L  K+  KILP DSEHSAIFQ ++
Sbjct:    4 VGILGSTGSVGSQALDVIRKYKDQIKVELLGASKLSENLINQIKEFKPSYVYVENAEEKSIDDIK-----------VLVGEDG-LRRAVNLDLDLFINAIAGIKGILPTYLLLKYNKTLATANKEAIICLGEL---LKDKYK-KILPIDSEHSAIFQILK 147          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxr PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.770e-19
Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            +LG+TGSIG  TL ++  +   F V  L A +++  +       +P+   + +E+   E+K  L N     ++  G + +          TV+  IVG AGL PT  A++AGK + LANKE L+  G   +  A      +LP DSEH+AIFQC+
Sbjct:    6 ILGATGSIGASTLSVMVNNPADFHVYGLVANASVQKMLALCITHQPEYAHMVDENAAMELKSLLPN-HCVTQVTTGAEALNALVTDSRTDTVMAAIVGAAGLVPTFDAVKAGKRVLLANKEALVMSGELFMHTARASGATVLPVDSEHNAIFQCL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEB9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS195) GN=dxr PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.312e-19
Identity = 50/155 (32.26%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            +LG+TGSIG  TL +++ +   + V  L A +++  +       KP+V  + +E+   +++  L       ++  G   ++      +  TV+  IVG AGL PT+ A++AGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+
Sbjct:    6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSGELFIEATKRSGAVLLPVDSEHNAIFQCL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEB5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxr PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.312e-19
Identity = 50/155 (32.26%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            +LG+TGSIG  TL +++ +   + V  L A +++  +       KP+V  + +E+   +++  L       ++  G   ++      +  TV+  IVG AGL PT+ A++AGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+
Sbjct:    6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSGELFIEATKRSGAVLLPVDSEHNAIFQCL 159          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_SHESH3.226e-2134.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LEIXX3.226e-2141.141-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOBA7.186e-2136.051-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_WOLSU9.385e-2136.181-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NAUPA2.731e-2038.161-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PERMH3.566e-2040.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SULSY1.355e-1938.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEFN1.770e-1934.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEB92.312e-1932.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEB52.312e-1932.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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