FC876235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHESH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella sediminis (strain HAW-EB3) GN=dxr PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21 Identity = 53/155 (34.19%), Postives = 88/155 (56.77%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 +LG+TGSIG+ TL ++ + D + V AL A +++ + + +PQ+ + + +K+ L EI GE +I+ +V+ IVG AGL PT+AA++AGK + LANKE+L+ G + + ++LP DSEH+AI+Q + Sbjct: 6 ILGATGSIGSSTLSVIESNPDAYSVYALVANTSVEKMLALCETHRPQIAHMVDGQAAKSLKQRLPT-SLNVEITTGEDQLIDIVSASCVDSVMAAIVGAAGLVPTLAAVKAGKRVLLANKESLVMSGRLFIDEMRRSGARVLPVDSEHNAIYQAL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_LEIXX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leifsonia xyli subsp. xyli GN=dxr PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21 Identity = 65/158 (41.14%), Postives = 89/158 (56.33%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + +LGSTGSIG Q L++VA + D+F+VV L AGS+ LA+Q +RF VR +L E L R DA V+ GI G GL PT+AA+E+G+ +ALANKE+LI GG V A +++P DSEHSA+ Q ++ Sbjct: 6 VVILGSTGSIGMQALEVVAANPDRFQVVGLTAGSSAGQLAEQAERF-----GVRETALGAGDSERL-------------------VRSVDADVVLNGITGSVGLGPTLAALESGRTLALANKESLIVGGELVKRAAAPG--QLIPVDSEHSALAQALR 137
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOBA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopirellula baltica GN=dxr PE=3 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 7.186e-21 Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIV-----AEHEDKFRVVALAAGSNITLLADQVK--RFKPQVVAVRNESLLDEIKEAL--------ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 ++VLG+TGSIG LD++ + + + V +++ S I L + P+ V V + + + +AL + + E+ + G ++ AA D VV IVG AGL+ T+AA+ AGK +ALANKETL+ GP V A + ++LP DSEHSAIFQC+ Sbjct: 24 VAVLGATGSIGVAALDVIENLNRCDPDFAWEVSSMSGHSQIDPLIELAGGCHTPPKCVVVSDAEMEAQAAKALRTASTQTSSRLTERCRLDVGPDALVRAATENDVDVVVAAIVGRAGLESTLAAVHAGKRVALANKETLVVAGPVVTRAAANNGAQLLPVDSEHSAIFQCL 195
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_WOLSU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Wolinella succinogenes GN=dxr PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 9.385e-21 Identity = 55/152 (36.18%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIF 477 +LGSTGSIG L + + + V L AG N++LL Q+ F+P+++ + + S E+ ++ + ++L GE+G+IE+ + V+ +VG GL+PT+ ++ GK +ALANKE+L+AGG FV KI+P DSEH +++ Sbjct: 3 LLGSTGSIGQNALSLARDF--RLPVEVLVAGHNLSLLNAQIAEFQPKIIVIADSSRASEL-----SLPKDSKLLFGEEGIIESLHLAQSSFVLNALVGFLGLRPTLESLRLGKTLALANKESLVAGGSFV------DASKIIPVDSEHFSLW 141
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_NAUPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=dxr PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.731e-20 Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIF 477 VLGSTGSIG TL+I ++ + L AG+N +L Q+K FKP+ V V++ ++I + P + GE+ V++ + +V +VG AGL+PT+ A E GK IALANKE+L+ G F+ KI P DSEH ++ Sbjct: 3 VLGSTGSIGVNTLEIARRYD--IEIEGLVAGNNYEVLNAQIKEFKPKYVVVKDLKTAEKI--------DFPNVKYGEEAVLDMIEKSKSDLIVNALVGDAGLRPTLKAQECGKKIALANKESLVNAGKFI------DTSKITPIDSEHFGLW 138
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PERMH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=dxr PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.566e-20 Identity = 64/159 (40.25%), Postives = 85/159 (53.46%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 K ++VLGSTGSIGTQTLDIV ++ D+ V LAA L DQ+ FKP+ V + + +K L GE G+ + A+ D + GI G G+ PT +E K +A ANKE +I G K++ I P DSEHSAIFQC+ Sbjct: 2 KRLAVLGSTGSIGTQTLDIVRKYRDRLEVSLLAASRVSEKLLDQIDEFKPEYVYIAEGEKIKGVK-----------TLIGEDGLYKLAQ-LDIDLFINGISGINGILPTYLLLENNKKLATANKEAIICLGEI---YGDKYS-DIFPIDSEHSAIFQCL 144
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SULSY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=dxr PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.355e-19 Identity = 61/160 (38.12%), Postives = 88/160 (55.00%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + +LGSTGS+G+Q LD++ +++D+ +V L A L +Q+K FKP V V N E +D+IK +L GE G + A + D + I G G+ PT ++ K +A ANKE +I G L K+ KILP DSEHSAIFQ ++ Sbjct: 4 VGILGSTGSVGSQALDVIRKYKDQIKVELLGASKLSENLINQIKEFKPSYVYVENAEEKSIDDIK-----------VLVGEDG-LRRAVNLDLDLFINAIAGIKGILPTYLLLKYNKTLATANKEAIICLGEL---LKDKYK-KILPIDSEHSAIFQILK 147
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxr PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.770e-19 Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 +LG+TGSIG TL ++ + F V L A +++ + +P+ + +E+ E+K L N ++ G + + TV+ IVG AGL PT A++AGK + LANKE L+ G + A +LP DSEH+AIFQC+ Sbjct: 6 ILGATGSIGASTLSVMVNNPADFHVYGLVANASVQKMLALCITHQPEYAHMVDENAAMELKSLLPN-HCVTQVTTGAEALNALVTDSRTDTVMAAIVGAAGLVPTFDAVKAGKRVLLANKEALVMSGELFMHTARASGATVLPVDSEHNAIFQCL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEB9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS195) GN=dxr PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.312e-19 Identity = 50/155 (32.26%), Postives = 84/155 (54.19%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 +LG+TGSIG TL +++ + + V L A +++ + KP+V + +E+ +++ L ++ G ++ + TV+ IVG AGL PT+ A++AGK + LANKE L+ G + + +LP DSEH+AIFQC+ Sbjct: 6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSGELFIEATKRSGAVLLPVDSEHNAIFQCL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEB5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxr PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.312e-19 Identity = 50/155 (32.26%), Postives = 84/155 (54.19%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 +LG+TGSIG TL +++ + + V L A +++ + KP+V + +E+ +++ L ++ G ++ + TV+ IVG AGL PT+ A++AGK + LANKE L+ G + + +LP DSEH+AIFQC+ Sbjct: 6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSGELFIEATKRSGAVLLPVDSEHNAIFQCL 159 The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 436
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bpback to top |