FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BACC1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus cereus (strain ATCC 10987) GN=dxr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG++GSIGTQTLD++  H D+FR+VA + G NI      ++ F PQ+V+V+ E   D +K  L  V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCL 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_ALKOO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 80/160 (50.00%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LGSTGSIGTQTLD+V  H +KF++VAL+A  NI  + +Q+  F P++VAV +    + +    A + +K ++++G +G+IE A    A  VVT +VG  GL PTV AI  GK IALANKETL+  G  +   A KH ++I+P DSEHSAIFQC+Q
Sbjct:    2 KNISILGSTGSIGTQTLDVVRNHPEKFKIVALSASGNIDAIENQIHEFHPEIVAVFHREKAEILS---ARIGKKVKVVSGIEGLIEVATLDSADIVVTSVVGSIGLIPTVEAIRCGKTIALANKETLVVAGELIKKEAEKHKVQIIPVDSEHSAIFQCLQ 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR2_BACHK (1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 OS=Bacillus thuringiensis subsp. konkukian GN=dxr2 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG++GSIGTQTLD++  H D+FR+VA + G NI      ++ F PQ+V+V+ E   D +K  L  V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKIVYGNEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCL 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR2_BACCZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 OS=Bacillus cereus (strain ZK / E33L) GN=dxr2 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG++GSIGTQTLD++  H D+FR+VA + G NI      ++ F PQ+V+V+ E   D +K  L  V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCL 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR2_BACAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 OS=Bacillus anthracis GN=dxr2 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG++GSIGTQTLD++  H D+FR+VA + G NI      ++ F PQ+V+V+ E   D +K  L  V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCL 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CLOPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.449e-38
Identity = 83/160 (51.88%), Postives = 111/160 (69.38%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K ISVLGSTGSIGTQTL++V  ++D  +V ALAA SNITLL +Q++ F P++V V +     E+K+ ++++E   E  AG  G+I  A    A  VV+ +VG  G+KP + AI  GKDIA ANKETL+  G  ++PL  KHN+ +LP DSEHSAIFQC+Q
Sbjct:    2 KIISVLGSTGSIGTQTLEVVRNNKD-LKVSALAASSNITLLEEQIREFHPKLVCVYDREKALELKKRVSDLEVTVE--AGMDGLIACATEESADIVVSAVVGMIGIKPVMEAILRGKDIAFANKETLVTAGHLIMPLVKKHNVNLLPVDSEHSAIFQCLQ 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PELPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelobacter propionicus (strain DSM 2379) GN=dxr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.104e-37
Identity = 81/160 (50.62%), Postives = 107/160 (66.88%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +S+LGSTGSIG  TL+IVA H D+FRV AL AG N+ LLA Q+++F P++ AV  +  +  + +    +E K  I+ G +G+IEAA   +   VV  IVG AGL PT AAI AGKDIALANKETL+  G   + +   H +K+ P DSEHSAIFQ ++
Sbjct:    2 KQLSILGSTGSIGVSTLEIVAAHPDRFRVSALTAGKNLELLARQIRQFSPRIAAVAAKEDVPRLAQLCDGLEVK--IVGGVEGLIEAATADETDMVVAAIVGAAGLVPTAAAIRAGKDIALANKETLVTAGHLFMEMVSSHGVKLYPVDSEHSAIFQSLE 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROVI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dxr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.441e-37
Identity = 79/159 (49.69%), Postives = 110/159 (69.18%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + +S+LGSTGSIG  TLD+V  H++ F VV LA G ++  LA+Q+K F+P +V+VR+E+  DE+K  L   + +PEI+ G +G    A    +  VV+ IVG AGL PT+ AI+AGKDIALANKETL+  G  V  L  ++ +++LP DSEHSAIFQ +
Sbjct:    2 RALSILGSTGSIGLSTLDVVRRHKESFSVVGLAEGHDVHALAEQIKEFRPTIVSVRDENAADELKTLLGPAD-RPEIVHGIEGAGTVAAAEGSDMVVSAIVGAAGLTPTIKAIKAGKDIALANKETLVVAGQLVSDLVKQNGVELLPVDSEHSAIFQSL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR1_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.193e-37
Identity = 75/160 (46.88%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D+++     +    +I  G  G I  A HPD+  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA ++  +++P DSEHSAIFQC++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIDLLEQQIKTFQPRIVSVATKDLADKLR---TRISANTKITHGTDGFIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCLK 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR1_BACCZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ZK / E33L) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.477e-37
Identity = 75/159 (47.17%), Postives = 109/159 (68.55%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++    ++    +I  G  G+I  A HPD+  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA ++  +++P DSEHSAIFQC+
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKMFQPRIVSVATKDLADTLR---MHISANTKITYGTDGLIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCL 158          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_BACC14.953e-3850.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ALKOO4.953e-3850.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR2_BACHK4.953e-3850.311-deoxy-D-xylulose 5-phosphate reductoisomerase 2 ... [more]
DXR2_BACCZ4.953e-3850.311-deoxy-D-xylulose 5-phosphate reductoisomerase 2 ... [more]
DXR2_BACAN4.953e-3850.311-deoxy-D-xylulose 5-phosphate reductoisomerase 2 ... [more]
DXR_CLOPH8.449e-3851.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELPD1.104e-3750.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROVI1.441e-3749.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACCR4.193e-3746.881-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR1_BACCZ5.477e-3747.171-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
back to top