FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:404..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELMI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.153e-37
Identity = 81/160 (50.62%), Postives = 107/160 (66.88%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LGSTGSIG QTL++V   E +  V ALAAGSN   L  Q++ ++P++ A+      + + EAL        ++ GE G+ EAA  P+  TVVT + G  GL PT+AAIEAGK+IALANKETL+A GP V+  A +  + ILP DSEHSAIFQC+Q
Sbjct:    3 KRIAILGSTGSIGRQTLEVVDRSEGRLTVQALAAGSNWKELLAQIEIYRPRLAAMMETEAAERLAEALWERGLPIPVVTGEAGLAEAACLPEVDTVVTAVSGAIGLGPTMAAIEAGKEIALANKETLVAAGPLVMAAARRREVTILPVDSEHSAIFQCLQ 162          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CLOD6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium difficile (strain 630) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.342e-37
Identity = 82/160 (51.25%), Postives = 111/160 (69.38%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA-NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LGSTGSIG QTLD+V ++ DKF +VA++A SNI LL +Q+  FKP+ V V  E+   ++KE L  N+E   E+LAG +G+   +   +   ++T +VG  GL PT+ AI+ G DIALANKETL+  G  V+  A K+N+ ILP DSEHSAIFQC+
Sbjct:    2 KKISILGSTGSIGKQTLDVVRDNRDKFEIVAISANSNIELLLEQIVEFKPKYVTVFEENKALKLKEMLPKNIEI--EVLAGMEGLKIISSLDEVDVLLTAVVGMIGLVPTLCAIKKGIDIALANKETLVTAGELVMKEAEKYNVNILPVDSEHSAIFQCL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PELPB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 78/159 (49.06%), Postives = 106/159 (66.67%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + +++LGSTGSIG  TLD+V +H +KF++  LA G ++ LLA+Q+K F P  V+VR+   + +++  L +   KPEI  G +G    A       VV+ IVG AGL PTV+AI+AGK IALANKETL+  G  V  L  KHN+ +LP DSEHSAIFQ +
Sbjct:    2 RSLAILGSTGSIGLSTLDVVRQHPEKFKIAGLAEGHDVALLAEQIKEFLPAAVSVRDADSVKKLQTLLGS--HKPEIFHGLEGAAAIASAEGVDMVVSAIVGAAGLLPTVSAIKAGKHIALANKETLVVAGKLVSDLVKKHNVHLLPVDSEHSAIFQSL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_EXIS2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 74/159 (46.54%), Postives = 109/159 (68.55%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +S++G TGSIGTQTLD++A + D+F++V+ A G NI +    + R +P++VAV +E++ ++++  L   +  P +L GE G+I  A    A  V+T +VG  GL+PT+AAIEAGK I LANKETL+  G  V+  A +  + ILP DSEH+AIFQC+
Sbjct:    2 KQVSIIGGTGSIGTQTLDVIAANPDRFQLVSFAFGKNIEVALPWLNRLRPELVAVLDETVKEQLEAVL---DYSPTVLVGEDGLIAVATADQADIVITAVVGAVGLRPTLAAIEAGKSIGLANKETLVTAGHLVMKKAREKGVAILPVDSEHAAIFQCL 157          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_EUBR3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 81/160 (50.62%), Postives = 112/160 (70.00%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LGSTGSIGTQTLD++ EH D  +VVAL+ G N++L+  Q + FKPQ V+V +E+   +++ +LA+ +   E+  G  G+I  A       VVT IVG  G++PT+AAI+A K IALANKETL+  G  ++PLA ++ + ILP DSEHSAIFQ +Q
Sbjct:    2 KKISILGSTGSIGTQTLDVIREHGD-MQVVALSCGRNLSLIEKQAREFKPQFVSVSDENDAKKLRTSLADTDI--EVGYGMDGLIRCATIEPCDIVVTAIVGMLGIRPTIAAIKAKKTIALANKETLVTAGHIIIPLAKEYGVSILPVDSEHSAIFQSLQ 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_THEPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter sp. (strain X514) GN=dxr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.593e-36
Identity = 77/160 (48.12%), Postives = 110/160 (68.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E   N+++  EIL G +G+ E  ++ DA  VV  + G AGL PTV AI+ GKDIALANKE L+  G  V+ L  K +I +LP DSEHSAI QC++
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRE---NLKKNVEILTGSKGLQEIVKY-DADLVVVAVEGIAGLIPTVTAIQMGKDIALANKEVLVTAGQIVMDLVKKKDISLLPVDSEHSAILQCLR 157          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOSM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sp. (strain M21) GN=dxr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.593e-36
Identity = 77/157 (49.04%), Postives = 105/157 (66.88%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 480
            K +++LGSTGSIG  TLD+VA + D FRVVAL AG+N+ LL  Q++ F+P++V+V        +  +L    +KPEI+ G +G+I AA   +   VV  IVG AGL PT AAI AGKD+ALANKETL+  G  V+ +  +  +K+ P DSEH A+FQ
Sbjct:    2 KNLTILGSTGSIGVSTLDVVAAYPDMFRVVALTAGNNLELLKTQIETFRPELVSVLTAEKAQALSRSLTG--KKPEIMHGVEGMIAAATASETTMVVAAIVGAAGLVPTTAAIMAGKDVALANKETLVTAGHLVMQMVREKKVKLYPVDSEHCAVFQ 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CHLPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dxr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.593e-36
Identity = 76/159 (47.80%), Postives = 106/159 (66.67%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + +S+LGSTGSIG  TLD+V +H ++F +  LA G ++ +L  Q++ F P++V+VRN     E+   L N  EKPEI  G +G    A    A  VV+ IVG AGL PT++AI+AGK+IALANKET++  G  V  LA +H + I+P DSEHSAI+Q +
Sbjct:    2 RSLSILGSTGSIGLSTLDVVRQHPEQFTITGLAEGHDVGMLVKQIREFNPRLVSVRNADAAAELASLLGN--EKPEIFYGIEGAATVAAADGADMVVSAIVGAAGLVPTISAIKAGKNIALANKETMVVAGRLVTDLARQHKVTIIPVDSEHSAIYQSL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_THEP3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=dxr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.081e-36
Identity = 77/160 (48.12%), Postives = 110/160 (68.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E   N+++  EIL G +G+ E  ++ DA  VV  + G AGL PTV AI+ GKDIALANKE L+  G  V+ L  K +I +LP DSEHSAI QC++
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRE---NLKKNVEILTGSKGLQEIVKY-DADLVVVAVEGIAGLIPTVTAIQRGKDIALANKEVLVTAGQIVMDLVKKKDITLLPVDSEHSAILQCLR 157          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR1_BACHK (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus thuringiensis subsp. konkukian GN=dxr1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.081e-36
Identity = 74/159 (46.54%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++     +    +I  G  G+I  A HP++  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA ++  +++P DSEHSAIFQC+
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLR---TRISTNTKITYGTDGLIAVATHPNSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCL 158          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_HELMI7.153e-3750.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOD69.342e-3751.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELPB1.220e-3649.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EXIS21.220e-3646.541-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBR31.220e-3650.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEPX1.593e-3648.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSM1.593e-3649.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLPD1.593e-3647.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEP32.081e-3648.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACHK2.081e-3646.541-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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