FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:404..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR1_BACAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus anthracis GN=dxr1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.081e-36
Identity = 74/159 (46.54%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++     +    +I  G  G+I  A HP++  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA ++  +++P DSEHSAIFQC+
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLR---TRISTNTKITYGTDGLIAVATHPNSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_DESHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxr PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.636e-36
Identity = 77/160 (48.12%), Postives = 111/160 (69.38%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +++LGSTGSIGTQTLDIV ++ ++  V ALAAG N+  +  Q + FKPQ++ +  E    E+K+ +A+++   E+++G +G++         TVVT I G  GL+PT+ A++AGKDIALANKETL+AGG  V+  A +    ILP DSEHSAIFQC++
Sbjct:    2 KRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIELQAREFKPQIIGLMEEKAARELKQRVADLDI--EVVSGMEGLLRTVTDEVPDTVVTAISGRIGLEPTMEALKAGKDIALANKETLVAGGDLVMGTAQRLGRTILPVDSEHSAIFQCLE 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PELTS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dxr PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.055e-36
Identity = 76/159 (47.80%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K I ++GSTGSIG QTL+++    D+F+VV L +G N  L+A+Q++ F+P  VA+  E  +  +KE LA     PE+  G  G+   A  P+A  VV  + G AG+ PT+AAI+AGKD+ALANKETL+A G  V+ +A +H   ILP DSEHSA++QC+
Sbjct:    2 KNIVLIGSTGSIGRQTLEVIGSLPDRFKVVGLGSGKNWRLMAEQIRVFRPSAVAMAGEREIMNLKELLAG-SYCPELGWGRTGMESLASMPEADLVVVAVTGFAGIYPTIAAIQAGKDVALANKETLVAAGHLVMKMAERHRAAILPVDSEHSAVWQCL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_DESPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotalea psychrophila GN=dxr PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.033e-35
Identity = 79/159 (49.69%), Postives = 105/159 (66.04%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LG+TGSIGT  L++V +  D++R+VA+AAG NI L A Q++ F P +V+V +E     ++E L     K  IL G  G  E A +P A   ++ IVG AGL PT+AAIEAGKDI LANKETL+  G  V+  A +  + +LP DSEHSAIFQ +
Sbjct:    2 KKISLLGATGSIGTSVLEVVRKFSDQYRIVAMAAGRNIDLFARQIEEFSPDLVSVLDEEYAHCLQERLGGFRGK--ILWGNAGNEEVAAYPSASITISAIVGAAGLLPTLAAIEAGKDIGLANKETLVMAGKIVMERARRKGVALLPVDSEHSAIFQAL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PHOLL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Photorhabdus luminescens subsp. laumondii GN=dxr PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.349e-35
Identity = 77/159 (48.43%), Postives = 104/159 (65.41%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +++LGSTGS+G  TL +V  + DKF+V ALAAG NI ++A+Q   F+PQ  A+ +E    E+++ L     K E+  GEQ   + A   D   V++GIVG AGL PT+AAI AGK I LANKE+LI  G F +    KHN ++LP DSEH+AIFQ +
Sbjct:    2 KRLTILGSTGSVGKSTLTVVRNNPDKFKVTALAAGKNIQVMAEQCLEFRPQYAAMADEVSAKELRQLLIEQGCKTEVFFGEQAACDLAALNDVDQVMSGIVGVAGLLPTLAAIRAGKQILLANKESLITSGRFFMDAVAKHNAQLLPIDSEHNAIFQSL 160          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOKA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacillus kaustophilus GN=dxr PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.349e-35
Identity = 79/160 (49.38%), Postives = 102/160 (63.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LG++GSIGTQTLD++  H D+FR+ A + G NI      +  F P +VAV +    D  K        +  I+ GE+G+IEAA  P A  VVT +VG  GL PT+ AIEAGK IALANKETL+  G  V+  A +  + +LP DSEHSAIFQC+Q
Sbjct:    2 KYISILGASGSIGTQTLDVIRAHPDEFRLAAASVGKNIEAARRLIAEFSPSLVAVADR---DAYKVLYREYRGRTTIVYGEEGLIEAAVCPQADVVVTAVVGSVGLVPTLKAIEAGKAIALANKETLVVAGHLVMAAAKRRGVPLLPVDSEHSAIFQCLQ 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CHLCH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=dxr PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.349e-35
Identity = 78/159 (49.06%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + +S+LGSTGSIG  TLD+V +H D+F +V LA G ++  LA Q++ FKP  V+VR+     +++E L     KPE+  G  G    A       VV+ IVG AGL+PTVAAI+AGK IALANKETL+  G  V  L  +H + +LP DSEHSAIFQ +
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHRDRFTIVGLAEGHDVAALAAQIEEFKPLAVSVRDAESAKKLQELLG--AHKPEVYYGLDGAATIAALDGVDMVVSAIVGAAGLRPTVAAIKAGKHIALANKETLVVAGELVSRLVAEHKVHLLPVDSEHSAIFQSL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CLOPE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens GN=dxr PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GKDIALANKETL+  G  V+  A ++ +KILP DSEHSAIFQ +Q
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTLDIIKEFSPKYVAINHEESYKKLVDLVKSEGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKDIALANKETLVVAGELVMREAKENGVKILPVDSEHSAIFQSLQ 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CLOP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GKDIALANKETL+  G  V+  A ++ +KILP DSEHSAIFQ +Q
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTMDIIKEFSPKYVAINHEESYKKLVDLVKSQGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKDIALANKETLVVAGELVMREAKENGVKILPVDSEHSAIFQSLQ 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_DESRM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotomaculum reducens (strain MI-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.005e-35
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K IS+LGSTGSIG QTL++V    ++  VVALAAG N  L  +Q K +KP +V+++ E     +KE L   + +PEI  G  G++  A   +AV VVT + G  GL PT AAI+A K IALANKETL+A G +V  LA ++ ++ILP DSEHSAI+QC+
Sbjct:    3 KQISILGSTGSIGRQTLEVVNSFPEELNVVALAAGRNRELFLEQCKAYKPLLVSLQLEEDALWLKEHLIKEKLRPEIRYGLDGLVAVATCHEAVVVVTALSGAIGLVPTCAAIKASKKIALANKETLVAAGQYVTKLAEEYKVEILPVDSEHSAIWQCL 161          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR1_BACAN2.081e-3646.541-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_DESHD4.636e-3648.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELTS6.055e-3647.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESPS1.033e-3549.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PHOLL1.349e-3548.431-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOKA1.349e-3549.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLCH1.349e-3549.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPE1.762e-3547.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOP11.762e-3547.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESRM3.005e-3550.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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