FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:404..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_STRCO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Streptomyces coelicolor GN=dxr PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 84/167 (50.30%), Postives = 110/167 (65.87%), Query Frame = 1
Query:    1 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA----NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            DGPK + VLGSTGSIGTQ +D+V  + D+FRV AL+A G  + LLA+Q  R K + VAV  E ++  ++EAL       E  PEILAG +   + A   D  TV+ GI G  GL PT+AA+EAG+ +ALANKE+LI GGP V  LA     +I+P DSEH+A+FQ +
Sbjct:   21 DGPKDVVVLGSTGSIGTQAIDLVLRNPDRFRVTALSANGGRVALLAEQAYRLKARTVAVAREDVVPALREALTAQYGTGEPLPEILAGPEAATQLAAS-DCHTVLNGITGSIGLAPTLAALEAGRTLALANKESLIVGGPLVKALAKPG--QIIPVDSEHAALFQAL 184          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SACD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            I VLGSTGSIG  TLD++A H DKF V AL A S+I LL +Q  +F PQ   +R+E+L   +K+ + ++    E+LAGEQ + + A      +V+  IVG AGL PT+AA+EAGK + LANKE+L+  G   +  A   +  +LP DSEH+AIFQC+
Sbjct:    4 ICVLGSTGSIGISTLDVLASHPDKFSVYALTANSSIDLLVEQCLKFSPQYAVIRDEALYLPLKQRIESLNCTTEVLAGEQALCDVASAVQVDSVMAAIVGAAGLAPTLAAVEAGKRVLLANKESLVMSGKLFMQAAKAASALVLPIDSEHNAIFQCL 160          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_DESHY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfitobacterium hafniense (strain Y51) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 75/160 (46.88%), Postives = 110/160 (68.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +++LGSTGSIGTQTLDIV ++ ++  V ALAAG N+  +  Q + FKP+++ +  E    E+K+ +A+++   E+++G +G++         TVVT I G  GL+PT+ A++ GKDIALANKETL+AGG  V+  A +    ILP DSEHSAIFQC++
Sbjct:    2 KRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIELQAREFKPRIIGLMEEKAARELKQRVADLDI--EVVSGMEGLLRTVTDEVPDTVVTAISGRIGLEPTMEALKVGKDIALANKETLVAGGDLVMGTAQRLGRTILPVDSEHSAIFQCLE 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GEOBB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=dxr PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.695e-35
Identity = 75/157 (47.77%), Postives = 101/157 (64.33%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 480
            K +++LGSTGSIG  TLD+V  + D FRVVAL AG+N+ LL  Q++ F P +V+V        +  +L    +KPEI+ G +G+I AA   +   VV  IVG AGL PT AAI AGKD+ALANKETL+  G  V+ +  +  + + P DSEH A+FQ
Sbjct:    2 KNLTILGSTGSIGVSTLDVVKAYPDMFRVVALTAGNNLELLKTQIETFSPDLVSVLTAEKAQALSRSLTG--KKPEIMHGVEGMIAAATASETTMVVAAIVGAAGLVPTTAAIMAGKDVALANKETLVTAGHLVMQMVREKKVNLYPVDSEHCAVFQ 156          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROMH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Proteus mirabilis (strain HI4320) GN=dxr PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K I++LGSTGSIGT TL ++  + D+F+V+AL AG N T +A Q + F+P+   + +E    E+K+ LAN   K EIL+G   V E A   +A  V++ I G AGLKPT+AAIE GK I LANKE+LI  G        K+  K+LP DSEH+AI+Q +
Sbjct:    2 KQITILGSTGSIGTSTLSVIENNPDEFQVLALVAGKNATKMAQQCRAFQPKYAVMSDEKSAGELKQLLANTSCKTEILSGSDAVNEIAALDEADQVMSAITGVAGLKPTLAAIEKGKRILLANKESLITSGRLFFDAVAKYGAKVLPIDSEHNAIYQSL 160          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CLOB6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=dxr PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34
Identity = 69/160 (43.12%), Postives = 108/160 (67.50%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LG+TGSIGTQTLD++ + +++ ++VA++A  +   + + +K FKP+   +  E+    +++   N +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++
Sbjct:    2 KNITILGATGSIGTQTLDVIRKEKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCVNSKIDTKVLKGMEGMIYISTLEEINTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLR 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CLOK5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.948e-34
Identity = 76/160 (47.50%), Postives = 102/160 (63.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LG TGSIGTQ LDI+ + E+ F++VA+++ S++  L D V  F P    +   +   + K+  +N     +IL G  G+      PD   V+T +VG  GL PT+ AIE+GKDIALANKETL+ GG  V  LA K+ +KI P DSEHSAIFQCI+
Sbjct:    2 KKISILGVTGSIGTQALDILRKDEENFKLVAVSSHSSVNKLLDIVDEFNPSYAVLTERNAYLKFKDHCSNKNLDTKILFGIDGLNTIVALPDIDMVLTSVVGMVGLVPTIKAIESGKDIALANKETLVVGGELVTKLAKKNKVKIFPVDSEHSAIFQCIK 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CLOK1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium kluyveri (strain NBRC 12016) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.948e-34
Identity = 76/160 (47.50%), Postives = 102/160 (63.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LG TGSIGTQ LDI+ + E+ F++VA+++ S++  L D V  F P    +   +   + K+  +N     +IL G  G+      PD   V+T +VG  GL PT+ AIE+GKDIALANKETL+ GG  V  LA K+ +KI P DSEHSAIFQCI+
Sbjct:    2 KKISILGVTGSIGTQALDILRKDEENFKLVAVSSHSSVNKLLDIVDEFNPSYAVLTERNAYLKFKDHCSNKNLDTKILFGIDGLNTIVALPDIDMVLTSVVGMVGLVPTIKAIESGKDIALANKETLVVGGELVTKLAKKNKVKIFPVDSEHSAIFQCIK 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BACV8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.948e-34
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LGSTGSIGTQ L ++ EH D + V AL A + + LL +Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+  +VG AGL+PT+ AI+AGK IALANKETL+  G  +  LA++++  +LP DSEHSAIFQC++
Sbjct:    3 KQIAILGSTGSIGTQALQVIEEHPDLYEVYALTANNRVDLLVEQARKFMPEAVVIANEEKYLQLKEALSDLPVK--VYAGADALSQIVESQPIDIVLASMVGYAGLRPTINAIKAGKAIALANKETLVVAGELINALANQYHTPVLPVDSEHSAIFQCLE 160          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_THETN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter tengcongensis GN=dxr PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.339e-34
Identity = 74/160 (46.25%), Postives = 111/160 (69.38%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K + +LGSTGSIG QTLD+V   +++F +V L   +N++LL+ Q+K F+P+VVAV++E    +++E   N++E  E+L G++G+ E  ++ +A  VV  + G AGL PTV AI+ GK+IALANKE L+  G  V+ L  +  I+ LP DSEHSAI QC++
Sbjct:    2 KKLIILGSTGSIGRQTLDVVRSLKEEFEIVGLTGYNNVSLLSKQIKEFRPKVVAVKDEEKARKLRE---NLDEPIEVLTGKEGLKEIVKY-EADMVVVAVEGIAGLIPTVEAIKLGKNIALANKEVLVTAGEIVMGLVKEKKIEFLPVDSEHSAILQCLK 157          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_STRCO3.925e-3550.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SACD23.925e-3547.771-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESHY3.925e-3546.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOBB6.695e-3547.771-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMH8.744e-3547.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOB61.491e-3443.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOK51.948e-3447.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOK11.948e-3447.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACV81.948e-3445.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THETN4.339e-3446.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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