FC876238

Overview
NameFC876238
Unique NameFC876238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:145..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_KLEPN (Malate dehydrogenase (Fragments) OS=Klebsiella pneumoniae GN=mdh PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVL AAGGI Q LA+L+K +       LYD+   TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLXAAGGI-QALALLLKTS-------LYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 87          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SALMU (Malate dehydrogenase (Fragment) OS=Salmonella muenchen GN=mdh PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  238 IGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            IGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+  +  AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    1 IGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED-VTPALEGADVVLISAGVARKPGMDRSDLFNVNAG 85          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_KLEVA (Malate dehydrogenase (Fragment) OS=Klebsiella variicola GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  295 LYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            LYD+   TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 LYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 66          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_KLEPR (Malate dehydrogenase (Fragment) OS=Klebsiella pneumoniae subsp. rhinoscleromatis GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  295 LYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            LYD+   TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 LYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 66          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_KLETE (Malate dehydrogenase (Fragment) OS=Klebsiella terrigena GN=mdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.097e-12
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  313 TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    6 TPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 63          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_KLEOX (Malate dehydrogenase (Fragment) OS=Klebsiella oxytoca GN=mdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.097e-12
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  313 TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    4 TPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 61          
The following BLAST results are available for this feature:
BLAST of FC876238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MDH_KLEPN3.691e-1753.68Malate dehydrogenase (Fragments) OS=Klebsiella pne... [more]
MDH_SALMU1.187e-1553.49Malate dehydrogenase (Fragment) OS=Salmonella muen... [more]
MDH_KLEVA1.229e-1254.55Malate dehydrogenase (Fragment) OS=Klebsiella vari... [more]
MDH_KLEPR1.229e-1254.55Malate dehydrogenase (Fragment) OS=Klebsiella pneu... [more]
MDH_KLETE6.097e-1255.93Malate dehydrogenase (Fragment) OS=Klebsiella terr... [more]
MDH_KLEOX6.097e-1255.93Malate dehydrogenase (Fragment) OS=Klebsiella oxyt... [more]

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Properties
Property NameValue
Genbank descriptionC32002B09EF DevOvary1 Citrus clementina cDNA clone C32002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876238 ID=FC876238; Name=FC876238; organism=Citrus clementina; type=EST; length=491bp
GGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCT
CCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCA
TTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGA
GAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCC
CGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTC
TGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTAT
GATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATAC
AAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCC
TCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCT
GGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAAT
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