FC876238

Overview
NameFC876238
Unique NameFC876238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:145..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.823e-32
Identity = 65/93 (69.89%), Postives = 80/93 (86.02%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINA 486
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNA 118          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.543e-31
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  133 TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            TL     +SGL  +  R    +P  KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTPGV AD+SH+D+NA V    G ++L  A+   D+++IPAGVPRKPGMTRDDLFN NAG
Sbjct:    7 TLVQAAANSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAG 123          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.016e-31
Identity = 63/94 (67.02%), Postives = 78/94 (82.98%), Query Frame = 1
Query:  205 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINA 486
            +KVAVLGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  +L D L  +++V+IPAGVPRKPGMTRDDLFNINA
Sbjct:   83 YKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINA 176          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.438e-31
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 1
Query:  184 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            A     G KVAVLGAAGGIGQPL+MLMK+N  VS L LYD+  TPGV AD+SH++T A V+GF  +  L +AL G D+VIIPAGVPRKPGMTRDDLF INAG
Sbjct:   56 APSSGKGRKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKDGLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAG 156          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.145e-26
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 1
Query:  196 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINA 486
            S  FKVAVLGA GGIGQPL+ML+K+N  VS L L+D+   PGV ADI H++T + V G+    + LE AL G D+VIIPAGVPRKPGMTRDDLF  NA
Sbjct:   26 SRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNA 123          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 57/96 (59.38%), Postives = 73/96 (76.04%), Query Frame = 1
Query:  205 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ--LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINA 486
            +KV VLGA GGIGQPL++L+K+N  V+ L LYD+    GV  D+SH+ TN+VV+GF  ++   L +AL   D+V+IPAGVPRKPGMTRDDLF INA
Sbjct:   18 YKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINA 113          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.399e-24
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query:  226 AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINA 486
            A+GGIG+PL++L+K +PL+S L LYD+ +  GV AD+SH++T A V   LG  +L + LTG ++VIIPAG+PRKPGMTRDDLFN NA
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKPGMTRDDLFNTNA 87          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 61/96 (63.54%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ L++L+K   P  + L LYDV    PGV  D+SH+ T+  V GF G+  L  ALTG DIV+IPAGVPRKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGTELALYDVAPVVPGVAVDLSHIPTDVKVEGF-GKDDLAKALTGSDIVLIPAGVPRKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVA+LGA+GG+GQPL++L+K++P VS L LYD+    G+  D+SH++TN+   G+  +  +E+ L+   +V+IPAGVPRKPG+TRDDLF +NAG
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAG 95          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.020e-23
Identity = 60/96 (62.50%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T+  V GF G+  L  ALTG DIV+IPAG+PRKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVAGF-GRDDLNGALTGADIVLIPAGMPRKPGMDRADLFNVNAG 96          
The following BLAST results are available for this feature:
BLAST of FC876238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MDHM_MOUSE1.823e-3269.89Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDHM_CAEEL1.543e-3158.82Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHP_ARATH2.016e-3167.02Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_CHLRE3.438e-3167.65Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDHM_SCHPO1.145e-2663.27Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHM_YEAST2.819e-2559.38Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDHM_SCHMA1.399e-2459.77Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDH_PSEA61.184e-2363.54Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]
MDHP_YEAST1.184e-2353.19Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]
MDH_COLP32.020e-2362.50Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002B09EF DevOvary1 Citrus clementina cDNA clone C32002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876238 ID=FC876238; Name=FC876238; organism=Citrus clementina; type=EST; length=491bp
GGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCT
CCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCA
TTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGA
GAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCC
CGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTC
TGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTAT
GATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATAC
AAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCC
TCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCT
GGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAAT
back to top