FC876238

Overview
NameFC876238
Unique NameFC876238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.446e-23
Identity = 60/96 (62.50%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T+  V GF G+  L  AL G DIV+IPAGVPRKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPGMDRSDLFNMNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.879e-23
Identity = 60/96 (62.50%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V G  G+  L DALTG D+V+IPAG+PRKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSDLALYDVAPVVPGVAVDLSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  V+GF GQ    DAL G D+V++ AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTDVEVKGFAGQDPT-DALVGADVVLMSAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_MANSM (Malate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.003e-22
Identity = 61/96 (63.54%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K+  P  S L LYDV   TPGV  D+SH+ T+ VV GF G    E AL G DIV+I AGV RKPGMTR DLF +NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSSLSLYDVAPVTPGVAKDLSHIPTDVVVEGFAGTDPSE-ALKGADIVLISAGVARKPGMTRADLFGVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.234e-22
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKVQGFAGEDPTP-ALQGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_VIBMA (Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  + GF G     DAL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSDLSLYDIAPVTPGVAVDLSHIPTDVTIAGFAGMDPT-DALVGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_MORS5 (Malate dehydrogenase OS=Moritella sp. (strain 5710) GN=mdh PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  + GF G     DAL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSDLSLYDIAPVTPGVAVDLSHIPTDVTIAGFAGMDPT-DALVGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_MORJA (Malate dehydrogenase OS=Moritella japonica GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  + GF G     DAL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAAVTPGVAVDLSHIPTDVTIAGFAGTDPT-DALVGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 59/96 (61.46%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF GQ     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPADSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGQDP-SPALEGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KV +LGA+GGIGQPL++L+K++ P  S L LYDV   TPGV  DISH+ T+  V GF G    E AL G DIV+I AGV RKPGMTR DLFN+NAG
Sbjct:    2 KVTLLGASGGIGQPLSLLLKLHLPAESDLSLYDVAPVTPGVAKDISHIPTSVEVEGFGGDDPSE-ALKGADIVLICAGVARKPGMTRADLFNVNAG 96          
The following BLAST results are available for this feature:
BLAST of FC876238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MDH_IDILO3.446e-2362.50Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_ALTMD5.879e-2362.50Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_SHEFN7.678e-2361.46Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDH_MANSM1.003e-2263.54Malate dehydrogenase OS=Mannheimia succiniciproduc... [more]
MDH_PASMU2.234e-2261.46Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_VIBMA2.918e-2260.42Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3... [more]
MDH_MORS52.918e-2260.42Malate dehydrogenase OS=Moritella sp. (strain 5710... [more]
MDH_MORJA2.918e-2260.42Malate dehydrogenase OS=Moritella japonica GN=mdh ... [more]
MDH_SHEWM4.977e-2261.46Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_ACTSZ4.977e-2261.46Malate dehydrogenase OS=Actinobacillus succinogene... [more]

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Properties
Property NameValue
Genbank descriptionC32002B09EF DevOvary1 Citrus clementina cDNA clone C32002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876238 ID=FC876238; Name=FC876238; organism=Citrus clementina; type=EST; length=491bp
GGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCT
CCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCA
TTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGA
GAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCC
CGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTC
TGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTAT
GATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATAC
AAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCC
TCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCT
GGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAAT
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