FC876241

Overview
NameFC876241
Unique NameFC876241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:106..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 106/189 (56.08%), Postives = 133/189 (70.37%), Query Frame = 1
Query:  157 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKE 720
            D ++ IGKTPLV LNRIV G  A + AK+E   P  SVK RIG +MI DAE++GL+ PG+  LIEPTSGNTGI LAF+AAA+G  L +TMP +MSLERR +L A+GA+LVLT+  +GM GAV++AE+I    P+ YV LQQF NPANP IH +TTGPEIW+     ID LVS            +Y+K+
Sbjct:   10 DNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGPGKE-LIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKGMTGAVRRAEDIAASDPDRYVLLQQFRNPANPAIHEQTTGPEIWEDTGGAIDILVSGVGTGGTITGVSRYIKQ 197          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 104/193 (53.89%), Postives = 134/193 (69.43%), Query Frame = 1
Query:  142 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLK 717
            S I +D +  IG TPLV LNRI +G   RI AK+E   P  SVK RIG +MI DAE++G+++PG   L+EPTSGNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A+GMKGA+QKAEEI    P  Y +LQQF NPANP+IH +TTGPEIW+     +D  +S            +Y+K
Sbjct:    2 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIK 190          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 104/193 (53.89%), Postives = 134/193 (69.43%), Query Frame = 1
Query:  142 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLK 717
            S I +D +  IG TPLV LNRI +G   RI AK+E   P  SVK RIG +MI DAE++G+++PG   L+EPTSGNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A+GMKGA+QKAEEI    P  Y +LQQF NPANP+IH +TTGPEIW+     +D  +S            +Y+K
Sbjct:    2 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIK 190          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 99/202 (49.01%), Postives = 134/202 (66.34%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVL-QQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            IA  +TELIG TPLV LNR+ +G  A +A KLE   P SSVKDRI  +MI  AE+ G I    +V++E TSGNTG+GLA + AA+GY+L ITMP SMS ER+M+L AFGAEL+LT  A GM GA+ KA+ + D  P++Y + +QF+N ANP++H +TT  EIW+     +D  V+            + LK++ PE+K+  V
Sbjct:    3 IANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVKDRIAEAMIEGAEKAGKINKN-TVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKERKMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEANPEVHRKTTAEEIWRDTDGKVDVFVAGVGTGGTITGVGEVLKKYKPEVKVVAV 203          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.078e-46
Identity = 103/193 (53.37%), Postives = 134/193 (69.43%), Query Frame = 1
Query:  142 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLK 717
            S I +D +  IG TPLV LNRI +G   RI AK+E   P  SVK RIG +MI DAE++G+++PG   L+EPTSGNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A+GMKGA+QKAEEI    P  Y +LQQF NPANP+IH +TTGPEIW+     +D  ++            +Y+K
Sbjct:    2 SKIFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIK 190          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.078e-46
Identity = 103/193 (53.37%), Postives = 134/193 (69.43%), Query Frame = 1
Query:  142 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLK 717
            S I +D +  IG TPLV LNRI +G   RI AK+E   P  SVK RIG +MI DAE++G+++PG   L+EPTSGNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A+GMKGA+QKAEEI    P  Y +LQQF NPANP+IH +TTGPEIW+     +D  ++            +Y+K
Sbjct:    2 SKIFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIK 190          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 3.137e-46
Identity = 105/202 (51.98%), Postives = 138/202 (68.32%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRH-RW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            +A  +TELIG TP+V LNR+ D   A +  KLE M P SSVKDRIG +MI  AE++G ++ G ++ IEPTSGNTGIGLA +AAAKG + I+ MP +MS+ERR +L A+GAELVLT  A GMKGA++KAEE+ +K    +V QQF NP+NP+IH +TTG EI ++     +DA V+            + LKE  P IK+Y V
Sbjct:    4 VANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSVKDRIGLAMIEAAEKEGKLKAGNTI-IEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELVLTPGAEGMKGAIKKAEELAEK-HGYFVPQQFNNPSNPEIHRQTTGKEIVEQFGDDQLDAFVAGIGTGGTITGAGEVLKEAYPSIKIYAV 203          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 102/202 (50.50%), Postives = 133/202 (65.84%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHR-W*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            I K +TEL+G+TP++ LNR++    A +  KLE   P SSVKDRI  SMI  AE +GLI PG+ V+IEPTSGNTGIGLA++ AAKGYR+II MP +MSLERR ++ A+GAELVLT  A GMKGA+ K E +  +   +++  QF NPANP IH +TT  EI +  +   +DA VS              LK+ +PE  +Y V
Sbjct:    4 IYKTITELVGQTPIIKLNRLIPNEAADVYVKLEAFNPGSSVKDRIALSMIEAAEAEGLISPGD-VIIEPTSGNTGIGLAWVGAAKGYRVIIVMPETMSLERRQIIQAYGAELVLTPGAEGMKGAIAKTETLAIEL-GAWMPMQFNNPANPSIHEKTTAQEILEAFKEISLDAFVSGVGTGGTLSGVSHVLKKASPETVIYAV 203          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.903e-43
Identity = 95/199 (47.74%), Postives = 130/199 (65.33%), Query Frame = 1
Query:  154 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            ++  E IG TP+V +N + +     I  KLE   P  S+KDRI  +MI DAE KGL+   +S +IEPTSGNTGIGLA +AA KGY+LI+ MP SMS+ERR ++ A+GAE VLT   +GMKGA++KA E+ ++TPNS++ +QF+NPAN KIH ETT  EI +     +D +++            K LKE  P +K+  V
Sbjct:    4 QNALETIGNTPVVKINNLFNSD-HEIWIKLEKSNPGGSIKDRIALAMIEDAEAKGLLNK-DSTIIEPTSGNTGIGLALVAAVKGYKLILVMPESMSIERRKIMEAYGAEFVLTPREKGMKGAIEKANELAEETPNSWIPRQFDNPANVKIHVETTAQEILQDFPEGLDYVITGVGTGGHITGIAKALKEKYPNLKVIAV 200          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.537e-43
Identity = 95/198 (47.98%), Postives = 132/198 (66.67%), Query Frame = 1
Query:  160 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW-*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            VT++IG TP+V L  +VD   A I  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP+IH  TTGPE+ ++     IDA ++            K LK+  P +++  +
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEIHELTTGPELVEQFEGRQIDAFLAGVGTGGTLSGVGKVLKKEYPNVEIVAI 204          
The following BLAST results are available for this feature:
BLAST of FC876241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SRPG_SYNE71.504e-4856.08Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_SALTY6.320e-4753.89Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI6.320e-4753.89Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_NEIMB6.320e-4749.01Cysteine synthase OS=Neisseria meningitidis serogr... [more]
CYSK_ECOLI1.078e-4653.37Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO571.078e-4653.37Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CYSK_BACSU3.137e-4651.98Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSK_STRP67.726e-4550.50Cysteine synthase OS=Streptococcus pyogenes seroty... [more]
CYSK_FLAS31.903e-4347.74Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CYSK_STAES5.537e-4347.98Cysteine synthase OS=Staphylococcus epidermidis (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002C02EF DevOvary1 Citrus clementina cDNA clone C32002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876241 ID=FC876241; Name=FC876241; organism=Citrus clementina; type=EST; length=752bp
GAATTATTATCAGGAGATTTATTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAATGGTGGAGGAGAAGTCCGTGATT
GCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAA
CCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGA
TGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCT
GATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGA
GCCTACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTA
AGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGA
AGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGC
CAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGA
CACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAG
ATCCACTACGAGACTACCGGACCAGAGATCTGGAAAAGGCACCGGTGGTA
GATTGATGCCCTTGTTTCTGGTATAGGGACTGGTGGTACTGTCACTGGTG
CAGGGAAGTATCTCAAAGAGCATAATCCTGAAATTAAGCTCTATGGCGTT
GA
back to top