FC876241

Overview
NameFC876241
Unique NameFC876241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:106..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.537e-43
Identity = 95/198 (47.98%), Postives = 132/198 (66.67%), Query Frame = 1
Query:  160 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW-*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            VT++IG TP+V L  +VD   A I  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP+IH  TTGPE+ ++     IDA ++            K LK+  P +++  +
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEIHELTTGPELVEQFEGRQIDAFLAGVGTGGTLSGVGKVLKKEYPNVEIVAI 204          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STAAW (Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.444e-43
Identity = 93/199 (46.73%), Postives = 133/199 (66.83%), Query Frame = 1
Query:  157 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW-*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+ ++     IDA ++            K LK+  P I++  +
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGVGKVLKKEYPNIEIVAI 204          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STAAS (Cysteine synthase OS=Staphylococcus aureus (strain MSSA476) GN=cysK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.444e-43
Identity = 93/199 (46.73%), Postives = 133/199 (66.83%), Query Frame = 1
Query:  157 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW-*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+ ++     IDA ++            K LK+  P I++  +
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGVGKVLKKEYPNIEIVAI 204          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STAAR (Cysteine synthase OS=Staphylococcus aureus (strain MRSA252) GN=cysK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.444e-43
Identity = 93/199 (46.73%), Postives = 133/199 (66.83%), Query Frame = 1
Query:  157 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW-*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+ ++     IDA ++            K LK+  P I++  +
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGVGKVLKKEYPNIEIVAI 204          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STAAN (Cysteine synthase OS=Staphylococcus aureus (strain N315) GN=cysK PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.444e-43
Identity = 93/199 (46.73%), Postives = 133/199 (66.83%), Query Frame = 1
Query:  157 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW-*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+ ++     IDA ++            K LK+  P I++  +
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGVGKVLKKEYPNIEIVAI 204          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STAAM (Cysteine synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cysK PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.444e-43
Identity = 93/199 (46.73%), Postives = 133/199 (66.83%), Query Frame = 1
Query:  157 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW-*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+ ++     IDA ++            K LK+  P I++  +
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGVGKVLKKEYPNIEIVAI 204          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_STAAC (Cysteine synthase OS=Staphylococcus aureus (strain COL) GN=cysK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.444e-43
Identity = 93/199 (46.73%), Postives = 133/199 (66.83%), Query Frame = 1
Query:  157 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW-*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            ++T++IG TP+V L  +VD   A +  KLE   P  SVKDRI  +MI  AE +G I+PG+++ +EPTSGNTGIGLAF+ AAKGY+ + TMP +MS ERR +L A+GAELVLT  +  MKGA++KA+E++++    +  QQFENPANP++H  TTGPE+ ++     IDA ++            K LK+  P I++  +
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEE-HGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGVGKVLKKEYPNIEIVAI 204          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.155e-40
Identity = 85/161 (52.80%), Postives = 113/161 (70.19%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 630
            I  +  +LIG TPLV LNR+     A++  KLE   P  SVKDR  Y MI +AE+ GL++PG SV+IEPTSGNTGIGLA  AAA+GY+ I+ MP +M+ ER  +L A+GAE+VLT     M G+++KA+E+ ++ PNSY+  QF+N ANP  H +TT PEI
Sbjct:    4 IVANTADLIGDTPLVRLNRLQPENAAQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVVLTPGEERMPGSIKKAKELAEQIPNSYIPMQFDNTANPDAHRKTTAPEI 163          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.483e-40
Identity = 96/191 (50.26%), Postives = 121/191 (63.35%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLK 717
            I +D +  IG TPLV LN I +G    I AK+E   P  SVK RIG +MI DAE+KG +     + IE TSGNTGI LA++AAA+ Y L + MP SMS+ERR +L + GA L+LT+   GMKGA+ KA EI       Y +L+QFENPANP+IH +TTGPEIWK  +  ID L+S            KY+K
Sbjct:    4 IYEDNSFTIGNTPLVRLNNIGNG---NILAKIESRNPSFSVKCRIGANMIWDAEKKGRLNKNIEI-IEATSGNTGIALAYVAAARNYSLTLIMPDSMSIERRKLLKSLGAHLILTNGKHGMKGAISKANEIVSLNTKRYLLLKQFENPANPEIHQKTTGPEIWKDTKGNIDILISGVGTGGTITGITKYIK 190          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.276e-39
Identity = 94/194 (48.45%), Postives = 123/194 (63.40%), Query Frame = 1
Query:  142 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKE 720
            S I +D +  IG TPLV LNRI +G    I  K+E   P  SVK RIG +MI  AE+   I      LIE TSGNTGI LA++AA++ YRL +TMP +MS+ER+ +L + GAEL+LTD   GMKGA+ KA +I  + P+ Y +L+QFENPANP+IH  TTGPEIW      +D L+S            +Y+K+
Sbjct:    2 SKIYQDNSLTIGNTPLVRLNRIGNG---NILVKIESRNPSFSVKCRIGANMIWHAEKNNNINKNVK-LIEATSGNTGIALAYVAASRNYRLTLTMPETMSIERKKILKSLGAELILTDGRYGMKGAISKANDIISRNPSKYFLLKQFENPANPEIHQITTGPEIWNDTNGNLDILISAVGTGGTITGITRYIKK 191          
The following BLAST results are available for this feature:
BLAST of FC876241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_STAEQ5.537e-4347.98Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAAW9.444e-4346.73Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAS9.444e-4346.73Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAR9.444e-4346.73Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAN9.444e-4346.73Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAM9.444e-4346.73Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAC9.444e-4346.73Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSM_BACSU1.155e-4052.80Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSK_BUCAP7.483e-4050.26Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CYSK_BUCAI1.276e-3948.45Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]

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Properties
Property NameValue
Genbank descriptionC32002C02EF DevOvary1 Citrus clementina cDNA clone C32002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876241 ID=FC876241; Name=FC876241; organism=Citrus clementina; type=EST; length=752bp
GAATTATTATCAGGAGATTTATTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAATGGTGGAGGAGAAGTCCGTGATT
GCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAA
CCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGA
TGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCT
GATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGA
GCCTACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTA
AGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGA
AGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGC
CAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGA
CACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAG
ATCCACTACGAGACTACCGGACCAGAGATCTGGAAAAGGCACCGGTGGTA
GATTGATGCCCTTGTTTCTGGTATAGGGACTGGTGGTACTGTCACTGGTG
CAGGGAAGTATCTCAAAGAGCATAATCCTGAAATTAAGCTCTATGGCGTT
GA
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