FC876241

Overview
NameFC876241
Unique NameFC876241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.411e-38
Identity = 88/175 (50.29%), Postives = 117/175 (66.86%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKRHRW*IDALVS 669
            I  D +  IG TPLV L     G    +  K+E   P  SVK RIG +M+  AE+ G +  G+ + ++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L   G  LVLT+ A+GMKGA+ KAEEI    P+ YV L+QFENPANP+IH ETTGPEIWK     +D +V+
Sbjct:    3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVA 174          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.562e-36
Identity = 84/197 (42.64%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  160 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            + + +G TPLV L R+       +  KLE   P  SVKDR   SMI  AE +G IRPG++ LIE TSGNTGI LA  AA KGY++I+ MP + + ER+  + A+GAEL+L     GM+GA   A++++ +     VL QF N  NP+ HY +TGPEIW++    I   VS            +YLKE NP +++ G+
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGARDLADKLQ-REGRGKVLDQFANGDNPEAHYHSTGPEIWQQTGGSITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGL 202          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.460e-35
Identity = 86/195 (44.10%), Postives = 115/195 (58.97%), Query Frame = 1
Query:  166 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            + IG TPLV L R+     + I  KLE   P  SVKDR   SMI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR  + A+GAEL+L    +GM+GA   A  + ++     +L QF NP NP  HY TTGPEIW++    I   VS            ++L+E    + + G+
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVSRFLREQEKPVTIVGL 198          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.907e-35
Identity = 85/195 (43.59%), Postives = 117/195 (60.00%), Query Frame = 1
Query:  166 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            + IG TPLV L R+     + +  KLE   P  SVKDR   SMI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR  + A+GAEL+L    +GM+GA   A E+ ++     +L QF NP NP  HY TTGPEIW++    I   VS            ++++E +  + + G+
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGL 198          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.466e-35
Identity = 79/197 (40.10%), Postives = 113/197 (57.36%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIK 738
            +  D+TELIG TPL+ L          + AKLEMM P  S+KDR+G  +I DA + G ++PG  V+IE T+GNTGIGLA  A   G + I  +P   S E++ ++ A GA ++ T    GM+GA+QKA ++  +  NSY + QF+N  NP  +Y+T GPE+W+     I   V+             +LKE NP +K
Sbjct:    3 VITDITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPG-GVIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYYKTLGPEMWEALDGNIHTFVAGAGSGGTFAGTASFLKEKNPAVK 198          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.615e-34
Identity = 83/207 (40.10%), Postives = 119/207 (57.49%), Query Frame = 1
Query:  139 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            K +I  ++ + IG TPLV +N++       + AK E      SVKDRIG+ MI DAEE G I+ G++ LIEPTSGNTGIGLA  AA KGY++IIT+P  MS E+  VL A GAE++ T         +  +  A+++  + PNS++L Q+ NP+NP  HY+ T  E+ ++    ID +V             + +KE  P   + GV
Sbjct:   29 KKLIMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSHILDQYGNPSNPLAHYDGTAEELLEQCEGKIDMIVCTAGTGGTITGIARKIKERLPNCIVVGV 234          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 8.014e-34
Identity = 90/206 (43.69%), Postives = 118/206 (57.28%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            I  D+ + IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G +RPG+++ IEPTSGNTGIGLA  AA KGYR II MP  MSLE+  VL A GAE+V T   AR    +  V  A  ++ + PNS++L Q+ N +NP  HY+TT  EI ++    +D LV+            + LKE  P  ++ GV
Sbjct:   76 ILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQEIPNSHILDQYRNASNPLAHYDTTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCQIIGV 280          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.367e-33
Identity = 89/206 (43.20%), Postives = 117/206 (56.80%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            I  D+   IG TP+V +NRI    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA KGYR II MP  MS+E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+ T  EI ++    +D LV+            + LKE  P  K+ GV
Sbjct:   73 ILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKVDMLVASAGTGGTITGIARKLKEKCPGCKIIGV 277          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.194e-33
Identity = 84/201 (41.79%), Postives = 118/201 (58.71%), Query Frame = 1
Query:  160 VTELIGKTPLVYLNRIVDGCV---ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            + +L+G TPLV + + +   +     I AKLE   P  SVKDR   SM  DA ++GLI+ G+ V+I+ TSGNTGI LA + AA G  + + MPA++S ER+ ++ AFGA+L LTDP  G  GA+    E+  K P  YV L Q+ NPAN K H+ +TG EIW + +  I   V+            + LK +NP I++ GV
Sbjct:   25 ILKLVGNTPLVRVKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKYVYLDQYNNPANWKAHFYSTGIEIWNQTKGRITHFVAGIGTGGTIMGTGRRLKIYNPNIQVIGV 224          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.194e-33
Identity = 85/215 (39.53%), Postives = 122/215 (56.74%), Query Frame = 1
Query:  133 EEKSVIAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHR-----W*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYG 747
            E+++    +V +L+G TPL+ L ++    G   +I AKLE+  P  S+KDRI  SM+ +AE  G I P  S LIEPTSGNTGIGLA + A KGYR IIT+P  MS E+  VL A GAE++ T  A      +  +  A+++  + P + +L Q+ N  NP+ HY  TG EI ++         + A+V+            KYLKE N +I++ G
Sbjct:    5 EQQADSRHNVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEKEIPGAVILDQYNNMMNPEAHYFGTGREIQRQLEDLNLFDNLRAVVAGAGTGGTISGISKYLKEQNDKIQIVG 219          
The following BLAST results are available for this feature:
BLAST of FC876241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_HAEIN1.411e-3850.29Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
CYSM_PSEAE8.562e-3642.64Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CYSM_SALTY1.460e-3544.10Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CYSM_ECOLI1.907e-3543.59Cysteine synthase B OS=Escherichia coli (strain K1... [more]
MCCA_BACSU9.466e-3540.10O-acetylserine dependent cystathionine beta-syntha... [more]
CBS_DICDI1.615e-3440.10Cystathionine beta-synthase OS=Dictyostelium disco... [more]
CBS_RABIT8.014e-3443.69Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CBS_RAT1.367e-3343.20Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CYSM_AQUAE5.194e-3341.79Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]
CBS_YEAST5.194e-3339.53Cystathionine beta-synthase OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC32002C02EF DevOvary1 Citrus clementina cDNA clone C32002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876241 ID=FC876241; Name=FC876241; organism=Citrus clementina; type=EST; length=752bp
GAATTATTATCAGGAGATTTATTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAATGGTGGAGGAGAAGTCCGTGATT
GCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAA
CCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGA
TGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCT
GATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGA
GCCTACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTA
AGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGA
AGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGC
CAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGA
CACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAG
ATCCACTACGAGACTACCGGACCAGAGATCTGGAAAAGGCACCGGTGGTA
GATTGATGCCCTTGTTTCTGGTATAGGGACTGGTGGTACTGTCACTGGTG
CAGGGAAGTATCTCAAAGAGCATAATCCTGAAATTAAGCTCTATGGCGTT
GA
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