FC876241

Overview
NameFC876241
Unique NameFC876241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:106..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.784e-33
Identity = 88/206 (42.72%), Postives = 117/206 (56.80%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            I  D+   IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA KGYR II MP  MS+E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+ T  EI ++    +D LV+            + LKE  P  K+ GV
Sbjct:   73 ILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGV 277          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.784e-33
Identity = 87/211 (41.23%), Postives = 120/211 (56.87%), Query Frame = 1
Query:  133 EEKSVIAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            E+   I  D+ + IG TP++ +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA +GYR II MP  MS E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+TT  EI ++    +D LV+            + LKE  P  ++ GV
Sbjct:   71 EKSPKILPDILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILRQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGV 280          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 87/206 (42.23%), Postives = 118/206 (57.28%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            I  D+ + IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA +GYR II MP  MS E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+TT  EI ++    +D LV+            + LKE  P  ++ GV
Sbjct:   76 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGV 280          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.850e-31
Identity = 75/160 (46.88%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  160 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKR 639
            + + +G TPLV L R+       +  KLE   P  SVKDR   SMI  AE +G I PG++ LIE TSGNTGI LA  AA KGYR+I+ MP + S ER+  + A+GAEL+      GM+GA   AE ++ +     VL QF N  NP+ HY +TGPEIW++
Sbjct:    8 IADCVGNTPLVRLQRMAGNTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELISVSKDDGMEGARDLAERMQAE-GRGKVLDQFANGDNPEAHYTSTGPEIWRQ 165          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.151e-30
Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            + + V+ELIG TP+++L +        + AK E + P  S+KDR  + MI DA +   I   ++ ++E TSGNTGI LA + A  G + I  MP SMSLERR ++  FGA L LT    GMKGAV KA EI   TPNS+++ QFEN +N   H + T  EI +     +D  V+            + LKE   ++ + GV
Sbjct:    3 VHEKVSELIGNTPIIHLKKFG----INVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQ-DTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILRDLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGV 198          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 74/162 (45.68%), Postives = 96/162 (59.26%), Query Frame = 1
Query:  166 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 630
            + +G TPLV L R+        DG   R+ AKLE   P  S+KDR    MI  AE  GL+RPG ++L EPTSGNTGI LA  A  KGYRLI  MP + S+ERR +L  +GA+++ +    G   AV  A+E+    P+  +L Q+ NPAN   HY  TGPE+
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPEL 169          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 74/162 (45.68%), Postives = 96/162 (59.26%), Query Frame = 1
Query:  166 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 630
            + +G TPLV L R+        DG   R+ AKLE   P  S+KDR    MI  AE  GL+RPG ++L EPTSGNTGI LA  A  KGYRLI  MP + S+ERR +L  +GA+++ +    G   AV  A+E+    P+  +L Q+ NPAN   HY  TGPE+
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPEL 169          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK1_SCHPO (Cysteine synthase 1 OS=Schizosaccharomyces pombe GN=cys11 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.261e-27
Identity = 73/185 (39.46%), Postives = 98/185 (52.97%), Query Frame = 1
Query:  172 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL--VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKE 720
            IG+TPL+ LN + +     I AK E   P  SVKDR  Y ++ DAE+KG +  G   ++E T+GNTGIGLA +A A+GY+ +I MP + S  +   L   GAE+  V   P         +A    + TPN+    QF+N AN   HYETTGPEIW + +  +D                KYLKE
Sbjct:   21 IGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRG-GTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTKGTVDGFTCSTGTGGTFAGVTKYLKE 204          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_EMENI (Cysteine synthase OS=Emericella nidulans GN=cysB PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 76/200 (38.00%), Postives = 105/200 (52.50%), Query Frame = 1
Query:  130 VEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKE 720
            V +       +TE IG TPL+ L R+ +   + I AK E   P  SVKDR    ++ DAEE+GL++PG +V +E T+GNTGIGLA +  +KGY+L+I MP + S  +  +L   GAE V   PA      +    KA    +   N+    QF+N AN + H ETTGPEIW +    +DA                YLK+
Sbjct:   26 VSQAQGFVNGLTEAIGNTPLIRLKRLSEETGSNILAKAEFQNPGGSVKDRAALYVVKDAEERGLLKPGGTV-VEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAE-VYPVPAVAFDNPENYNHKARRHAESLDNAVWTNQFDNTANRRAHIETTGPEIWAQTGGKLDAFTCSTGTGGTLAGITYYLKQ 223          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_HELPY (Cysteine synthase OS=Helicobacter pylori GN=cysM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.488e-27
Identity = 71/204 (34.80%), Postives = 115/204 (56.37%), Query Frame = 1
Query:  145 VIAKDVTELIGKTPLV-YLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            +I   + + IG+TP+  + N+     + + I AKLE + P  SVKDR+G  +I +  + G I   ++ +IEPT+GNTGI LA +A     + I  +P   S E++ ++ A GA ++ T  + G+ GA++K++E+ +  P+SY+  QFENP NP  +Y T  PEI +     + + V+            +YLKE  P I+L GV
Sbjct:    2 MIITTMQDAIGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKIT-SKTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGTARYLKERIPAIRLIGV 204          
The following BLAST results are available for this feature:
BLAST of FC876241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CBS_MOUSE6.784e-3342.72Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CBS_MACFA6.784e-3341.23Cystathionine beta-synthase OS=Macaca fascicularis... [more]
CBS_HUMAN1.511e-3242.23Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CYSM_PSESY2.850e-3146.88Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
CYSM_CAMJE3.151e-3039.30Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_MYCTU2.668e-2945.68Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO2.668e-2945.68Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSK1_SCHPO3.261e-2739.46Cysteine synthase 1 OS=Schizosaccharomyces pombe G... [more]
CYSK_EMENI4.259e-2738.00Cysteine synthase OS=Emericella nidulans GN=cysB P... [more]
CYSM_HELPY9.488e-2734.80Cysteine synthase OS=Helicobacter pylori GN=cysM P... [more]

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Properties
Property NameValue
Genbank descriptionC32002C02EF DevOvary1 Citrus clementina cDNA clone C32002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876241 ID=FC876241; Name=FC876241; organism=Citrus clementina; type=EST; length=752bp
GAATTATTATCAGGAGATTTATTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAATGGTGGAGGAGAAGTCCGTGATT
GCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAA
CCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGA
TGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCT
GATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGA
GCCTACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTA
AGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGA
AGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGC
CAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGA
CACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAG
ATCCACTACGAGACTACCGGACCAGAGATCTGGAAAAGGCACCGGTGGTA
GATTGATGCCCTTGTTTCTGGTATAGGGACTGGTGGTACTGTCACTGGTG
CAGGGAAGTATCTCAAAGAGCATAATCCTGAAATTAAGCTCTATGGCGTT
GA
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