FC876241

Overview
NameFC876241
Unique NameFC876241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:106..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.488e-27
Identity = 72/204 (35.29%), Postives = 110/204 (53.92%), Query Frame = 1
Query:  145 VIAKDVTELIGKTPLVYLNR--IVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            +I   + + IG+TP+    R        + I AKLE + P  SVKDR+G  +I +A     I    + +IEPT+GNTGI LA +A     + I  +P   S E++ ++ A GA ++ T  + G+ GA++K++E+ +  P+SY+  QFENP NP  +Y T  PEI +     + + V+            KYLKE  P I+L GV
Sbjct:    1 MILTAMQDAIGRTPIFKFTRKDYPIPLKSAIYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKIT-STTTIIEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGMAKYLKERIPNIRLIGV 203          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 74/197 (37.56%), Postives = 106/197 (53.81%), Query Frame = 1
Query:  160 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKG-LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL------VLTDPARGMKGAVQKAEEIRDKTPN---SYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKE 720
            V ELIG TPLV +  +       I AKLE+  P  S KDR+  ++I  AEE G L+R     + E TSG+TGI +A +  A GYR  I++P   SLE+  +L + GA +       + DP + +  A +   E++ K+ N   +    QFEN AN K+HY+TTGPEI  + +  IDA ++            K+LKE
Sbjct:   49 VEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELK-KSGNGIRAVFADQFENEANWKVHYQTTGPEIAHQTKGNIDAFIAGCGTGGTITGVAKFLKE 244          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.190e-22
Identity = 64/202 (31.68%), Postives = 103/202 (50.99%), Query Frame = 1
Query:  142 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA---VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIK 738
            S I+  + E +G TPL+ +  + +     I  K E M P  S KDR+   +I D E+KGL++ G S ++E T+G+TGI L  +  ++GY + + +P ++S E+  +L   GAE  +  P  GM  A   +  A +       ++   QF+N +N   HY  T  EIW++ +  +D  V+             YLKE NP I+
Sbjct:   36 SGISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKG-STIVEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIV-PIVGMNNANHFMHCAYQRCLGDDMAFYANQFDNLSNFNAHYNGTAKEIWEQTKGDVDGFVAAAGTGGTVAGISSYLKEVNPNIQ 235          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 68/206 (33.01%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES-VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV------LTDPARGMKGAVQKAEE--IRDKTPNS-YVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEI 735
            I   V  LIG T +V +  +       I AK E + P +S KDR+   MI  AEE G + P +S  + E T+G+TGI +A +  + GY   I MP+  S E+  +L   GA +       + DP   +  A + A    + +  P   Y   QFENPAN + H+ +TGPEIW++    +DA ++            +YLK  +P I
Sbjct:   42 IVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQRVTPAPIVDPNHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGGTIAGISRYLKSKDPSI 247          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSM_RALME (Cysteine synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=cysM PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 57/206 (27.67%), Postives = 96/206 (46.60%), Query Frame = 1
Query:  145 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA--ELVLTDPARG--MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            ++   + E IG TPLV L R+     A + AKLE++ P  SVKDR    ++     +G I P  S +IE +SGN  I LA +   KG R    +   +S     +L  +GA  E V    ++G  ++  +++  ++  +  ++  + Q+ NP N + HY     EI  +     D LV             + L++  P +++ GV
Sbjct:    1 MVCNSIIESIGNTPLVQLRRLFGRADAEVFAKLELLNPAGSVKDRPARYIVEKGLTEGAIGP-HSHVIESSSGNLAIALAMICGLKGLRFTAVVDPKISPTNLKILRCYGAGIEQVTAKDSQGGYLETRIERVRQMLREQRDAIWINQYANPLNWESHYYGEAAEILAQLAQPADVLVLGVSTSGTVHGIARRLRKAWPSMRVVGV 205          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 62/202 (30.69%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  160 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL--VLTDPARGMKGAVQK---AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            VT+LIG+TP++ ++  V G  A +  K+E   P  S+KDR+  SM+  A + G + PG ++ +E +SGNTG GLA  A   G R I  +    + ++  ++ A GAE+  V  D        V++   A ++  + P +  + Q +NPANP+  Y     E+  +    IDA V             + LK +NP ++   V
Sbjct:    6 VTQLIGQTPVMSID--VPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTI-VESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEIRYVEGDFREDEVAVVERQRLAAQLGAQLPGALFMNQSDNPANPE-GYTGLVDELVAQLPDGIDAFVGCVGTGGSMTGISQRLKRNNPAVRTIAV 203          
The following BLAST results are available for this feature:
BLAST of FC876241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSM_HELPJ9.488e-2735.29Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
CYSK_YEAST1.515e-2437.56Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSK_DICDI9.190e-2231.68Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
CYSK2_SCHPO1.200e-2133.01Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
CYSM_RALME1.421e-1427.67Cysteine synthase OS=Ralstonia metallidurans (stra... [more]
Y4XP_RHISN2.424e-1430.69Putative cysteine synthase OS=Rhizobium sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32002C02EF DevOvary1 Citrus clementina cDNA clone C32002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876241 ID=FC876241; Name=FC876241; organism=Citrus clementina; type=EST; length=752bp
GAATTATTATCAGGAGATTTATTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAATGGTGGAGGAGAAGTCCGTGATT
GCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAA
CCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGA
TGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCT
GATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGA
GCCTACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTA
AGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGA
AGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGC
CAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGA
CACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAG
ATCCACTACGAGACTACCGGACCAGAGATCTGGAAAAGGCACCGGTGGTA
GATTGATGCCCTTGTTTCTGGTATAGGGACTGGTGGTACTGTCACTGGTG
CAGGGAAGTATCTCAAAGAGCATAATCCTGAAATTAAGCTCTATGGCGTT
GA
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