FC876245
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11 Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+ Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEI 117
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11 Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+ Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEI 117
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2 Query: 377 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PEL Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 113
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2 Query: 377 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PEL Sbjct: 45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 97
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2 Query: 377 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PEL Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 117
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2 Query: 377 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PEL Sbjct: 62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 114
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.895e-11 Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 2 Query: 344 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPE 532 P+R ++ P S PE+L+G + GD+G+DP GLG PE E++H RWAMLGAAG IPE Sbjct: 65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPE 132
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11 Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G P D+G+D GL +DPET N + E++HCRWAMLGA G PEL Sbjct: 68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 2 Query: 344 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 PNR W + + P +L G PGD+G+D GL +DPET + + E++H RWAMLGA G PEL Sbjct: 39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPEL 105
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11 Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 2 Query: 344 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P+RP + P +L G PGD+G+D + +DPET N + E++HCRWAMLGA G PEL Sbjct: 53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118 The following BLAST results are available for this feature:
BLAST of FC876245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876245 ID=FC876245; Name=FC876245; organism=Citrus clementina; type=EST; length=537bpback to top |