FC876245

Overview
NameFC876245
Unique NameFC876245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEI 117          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEI 117          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  377 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 113          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  377 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 97          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  377 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 117          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  377 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 114          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.895e-11
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 2
Query:  344 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPE 532
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPE 132          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 2
Query:  344 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PEL
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPEL 105          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  344 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118          
The following BLAST results are available for this feature:
BLAST of FC876245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB24_SOLLC1.299e-1153.85Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC1.299e-1153.85Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_ORYSJ1.697e-1154.72Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN1.697e-1154.72Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ1.697e-1154.72Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_MAIZE1.697e-1154.72Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB26_ARATH2.895e-1147.06Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_PETSP3.781e-1153.85Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB2_CHLRE4.938e-1146.27Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PINTH4.938e-1145.45Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionC32002C07EF DevOvary1 Citrus clementina cDNA clone C32002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876245 ID=FC876245; Name=FC876245; organism=Citrus clementina; type=EST; length=537bp
GAAGCCAGTTAGAGATCCACTCTTCTATCCTTAAAGATAAGCCCCGGCAT
CCATTAACATTAACAAGTTTTTGTATCTTCTGTTCACTGCCAATTGTATT
CTACTTTACACGCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTG
CCTGGTAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCA
TCTCATCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAG
GCTTCTTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAAC
AGCGGGAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACA
GGCCCCTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGC
CTCCCCGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGA
GACGCTGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAA
TGTTAGGAGCTGCAGGAATTTTCATTCCGGAATTGTT
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