FC876246

Overview
NameFC876246
Unique NameFC876246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 1.521e-65
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT1_ARATH (Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 1.521e-65
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.987e-65
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.987e-65
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.987e-65
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 2.595e-65
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRH+GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHSGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.780e-65
Identity = 114/119 (95.80%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDI+PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV+P+EHP+LLTEAPLNPKANRE
Sbjct:    1 MADAEDIEPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVSPDEHPVLLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 9.860e-65
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MA+ EDIQPLVCDNGTGMVKAGFAGDDAPRAVFP IVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPRIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.869e-64
Identity = 113/119 (94.96%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD +DIQPLVCDNGTGMVKAGFAGDD+PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILT KYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADVDDIQPLVCDNGTGMVKAGFAGDDSPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTWKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 119
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 8.347e-64
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDA RAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDA-RAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
The following BLAST results are available for this feature:
BLAST of FC876246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
ACT3_ORYSI1.521e-6598.32Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT1_ARATH1.521e-6598.32Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=... [more]
ACT_GOSHI1.987e-6597.48Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT4_ARATH1.987e-6597.48Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT12_ARATH1.987e-6597.48Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACT11_SOLTU2.595e-6597.48Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]
ACT13_SOLTU5.780e-6595.80Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT3_SOLTU9.860e-6596.64Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT7_SOLTU2.869e-6494.96Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ACT2_PEA8.347e-6497.48Actin-2 OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32002C11EF DevOvary1 Citrus clementina cDNA clone C32002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876246 ID=FC876246; Name=FC876246; organism=Citrus clementina; type=EST; length=475bp
GGTTGCCAATTCGAACCCAACGTAAGGCTGTGAGAGCTGCGCGGGTAAGC
TGAGACCATCTCAGGGAACGTGAATTCTAGTGTTTCGATAAGTGTATTCT
CTAGCAGTCACTAGAAGATGGCAGATACCGAGGATATTCAGCCTCTTGTC
TGCGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGACGC
TCCAAGGGCTGTGTTCCCTAGCATTGTTGGCCGGCCTCGTCATACTGGAG
TCATGGTTGGCATGGGGCAGAAAGATGCATACGTTGGTGATGAAGCTCAG
TCTAAGCGTGGTATTTTGACTTTGAAGTATCCAATTGAGCATGGAATTGT
TAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTTTACAATG
AACTTCGCGTTGCTCCAGAAGAACATCCTATTCTCCTCACTGAAGCACCA
CTCAACCCAAAGGCCAATCGTGAGA
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