FC876246

Overview
NameFC876246
Unique NameFC876246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_RAT (Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_PONAB (Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_PIG (Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_PANTR (Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_MOUSE (Actin, cytoplasmic 1 OS=Mus musculus GN=Actb PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_MESAU (Actin, cytoplasmic 1 OS=Mesocricetus auratus GN=ACTB PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_MACFA (Actin, cytoplasmic 1 OS=Macaca fascicularis GN=ACTB PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_HUMAN (Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_HORSE (Actin, cytoplasmic 1 OS=Equus caballus GN=ACTB PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_CRIGR (Actin, cytoplasmic 1 OS=Cricetulus griseus GN=ACTB PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.056e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
The following BLAST results are available for this feature:
BLAST of FC876246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
ACTB_RAT1.056e-5891.30Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb ... [more]
ACTB_PONAB1.056e-5891.30Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 ... [more]
ACTB_PIG1.056e-5891.30Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV... [more]
ACTB_PANTR1.056e-5891.30Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE... [more]
ACTB_MOUSE1.056e-5891.30Actin, cytoplasmic 1 OS=Mus musculus GN=Actb PE=1 ... [more]
ACTB_MESAU1.056e-5891.30Actin, cytoplasmic 1 OS=Mesocricetus auratus GN=AC... [more]
ACTB_MACFA1.056e-5891.30Actin, cytoplasmic 1 OS=Macaca fascicularis GN=ACT... [more]
ACTB_HUMAN1.056e-5891.30Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 ... [more]
ACTB_HORSE1.056e-5891.30Actin, cytoplasmic 1 OS=Equus caballus GN=ACTB PE=... [more]
ACTB_CRIGR1.056e-5891.30Actin, cytoplasmic 1 OS=Cricetulus griseus GN=ACTB... [more]

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Properties
Property NameValue
Genbank descriptionC32002C11EF DevOvary1 Citrus clementina cDNA clone C32002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876246 ID=FC876246; Name=FC876246; organism=Citrus clementina; type=EST; length=475bp
GGTTGCCAATTCGAACCCAACGTAAGGCTGTGAGAGCTGCGCGGGTAAGC
TGAGACCATCTCAGGGAACGTGAATTCTAGTGTTTCGATAAGTGTATTCT
CTAGCAGTCACTAGAAGATGGCAGATACCGAGGATATTCAGCCTCTTGTC
TGCGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGACGC
TCCAAGGGCTGTGTTCCCTAGCATTGTTGGCCGGCCTCGTCATACTGGAG
TCATGGTTGGCATGGGGCAGAAAGATGCATACGTTGGTGATGAAGCTCAG
TCTAAGCGTGGTATTTTGACTTTGAAGTATCCAATTGAGCATGGAATTGT
TAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTTTACAATG
AACTTCGCGTTGCTCCAGAAGAACATCCTATTCTCCTCACTGAAGCACCA
CTCAACCCAAAGGCCAATCGTGAGA
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