FC876246

Overview
NameFC876246
Unique NameFC876246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTG_RAT (Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTG_RANLE (Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTG_MOUSE (Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTG_HUMAN (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTG_CHICK (Actin, cytoplasmic 2 OS=Gallus gallus GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTG_BOVIN (Actin, cytoplasmic 2 OS=Bos taurus GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTC_BRAFL (Actin, cytoplasmic OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +D+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTC_BRABE (Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +D+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB_ORYLA (Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELR+APEEHP+LLTEAPLNPKANRE
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANRE 117
[Close]
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTB1_DANRE (Actin, cytoplasmic 1 OS=Danio rerio GN=actba PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 1.379e-58
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
The following BLAST results are available for this feature:
BLAST of FC876246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
ACTG_RAT1.379e-5891.30Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1... [more]
ACTG_RANLE1.379e-5891.30Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=... [more]
ACTG_MOUSE1.379e-5891.30Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1... [more]
ACTG_HUMAN1.379e-5891.30Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1... [more]
ACTG_CHICK1.379e-5891.30Actin, cytoplasmic 2 OS=Gallus gallus GN=ACTG1 PE=... [more]
ACTG_BOVIN1.379e-5891.30Actin, cytoplasmic 2 OS=Bos taurus GN=ACTG1 PE=1 S... [more]
ACTC_BRAFL1.379e-5890.43Actin, cytoplasmic OS=Branchiostoma floridae PE=2 ... [more]
ACTC_BRABE1.379e-5890.43Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 ... [more]
ACTB_ORYLA1.379e-5890.43Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE... [more]
ACTB1_DANRE1.379e-5891.30Actin, cytoplasmic 1 OS=Danio rerio GN=actba PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC32002C11EF DevOvary1 Citrus clementina cDNA clone C32002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876246 ID=FC876246; Name=FC876246; organism=Citrus clementina; type=EST; length=475bp
GGTTGCCAATTCGAACCCAACGTAAGGCTGTGAGAGCTGCGCGGGTAAGC
TGAGACCATCTCAGGGAACGTGAATTCTAGTGTTTCGATAAGTGTATTCT
CTAGCAGTCACTAGAAGATGGCAGATACCGAGGATATTCAGCCTCTTGTC
TGCGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGACGC
TCCAAGGGCTGTGTTCCCTAGCATTGTTGGCCGGCCTCGTCATACTGGAG
TCATGGTTGGCATGGGGCAGAAAGATGCATACGTTGGTGATGAAGCTCAG
TCTAAGCGTGGTATTTTGACTTTGAAGTATCCAATTGAGCATGGAATTGT
TAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTTTACAATG
AACTTCGCGTTGCTCCAGAAGAACATCCTATTCTCCTCACTGAAGCACCA
CTCAACCCAAAGGCCAATCGTGAGA
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