FC876246

Overview
NameFC876246
Unique NameFC876246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT1_PEA (Actin-1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 8.347e-64
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 1
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDA RAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDA-RAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT8_ARATH (Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 1.424e-63
Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 1
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD +DIQP+VCDNGTGMVKAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKDAYVGDEAQSKRGILTLKYPIEHG+VSNWDDMEKIWHHTFYNELR+APEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANRE 119          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSJ (Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.859e-63
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 1
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKANRE
Sbjct:    4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRE 118          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSI (Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.859e-63
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 1
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPKANRE
Sbjct:    4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRE 118          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 1.859e-63
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDAYV DEAQSKRGILTLKYP EHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADVEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHAGVMVGMGQKDAYVVDEAQSKRGILTLKYPXEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 119          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 4.143e-63
Identity = 109/119 (91.60%), Postives = 116/119 (97.48%), Query Frame = 1
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MA+ +DIQP+VCDNGTGMVKAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKDAYVGDEAQSKRGILTLKYPIEHG+VSNWDDMEKIWHHTFYNELR+APEEHP+LLTEAPLNPKANRE
Sbjct:    1 MAEADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANRE 119          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.056e-62
Identity = 112/119 (94.12%), Postives = 116/119 (97.48%), Query Frame = 1
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI+TLKYPIEHGIVSNWDDM +IWHHTFYNELR +PEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIITLKYPIEHGIVSNWDDM-RIWHHTFYNELRASPEEHPVLLTEAPLNPKANRE 118          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 3.507e-62
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 1
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD E++  LVCDNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADGEEVSALVCDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 119          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT1_SOYBN (Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 3.507e-62
Identity = 111/119 (93.28%), Postives = 114/119 (95.80%), Query Frame = 1
Query:  118 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD EDIQPLVCDNGTGMVKAG AGDDAPRAVFPSIVGRPRHT V+VGMGQKDAYVGDEAQ +RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPK NRE
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGLAGDDAPRAVFPSIVGRPRHTXVVVGMGQKDAYVGDEAQVQRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKYNRE 119          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.273e-61
Identity = 116/121 (95.87%), Postives = 117/121 (96.69%), Query Frame = 1
Query:  118 MADT-EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV-GRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            MAD  EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV GRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI HHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 MADGGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKISHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 121          
The following BLAST results are available for this feature:
BLAST of FC876246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
ACT1_PEA8.347e-6497.48Actin-1 OS=Pisum sativum PE=2 SV=1[more]
ACT8_ARATH1.424e-6392.44Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2[more]
ACT7_ORYSJ1.859e-6396.52Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE... [more]
ACT7_ORYSI1.859e-6396.52Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3... [more]
ACT6_SOLTU1.859e-6394.96Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT2_ARATH4.143e-6391.60Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]
ACT1_DAUCA2.056e-6294.12Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACT_COLSC3.507e-6292.44Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT1_SOYBN3.507e-6293.28Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2[more]
ACT2_DAUCA2.273e-6195.87Actin-2 OS=Daucus carota PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32002C11EF DevOvary1 Citrus clementina cDNA clone C32002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876246 ID=FC876246; Name=FC876246; organism=Citrus clementina; type=EST; length=475bp
GGTTGCCAATTCGAACCCAACGTAAGGCTGTGAGAGCTGCGCGGGTAAGC
TGAGACCATCTCAGGGAACGTGAATTCTAGTGTTTCGATAAGTGTATTCT
CTAGCAGTCACTAGAAGATGGCAGATACCGAGGATATTCAGCCTCTTGTC
TGCGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGACGC
TCCAAGGGCTGTGTTCCCTAGCATTGTTGGCCGGCCTCGTCATACTGGAG
TCATGGTTGGCATGGGGCAGAAAGATGCATACGTTGGTGATGAAGCTCAG
TCTAAGCGTGGTATTTTGACTTTGAAGTATCCAATTGAGCATGGAATTGT
TAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTTTACAATG
AACTTCGCGTTGCTCCAGAAGAACATCCTATTCTCCTCACTGAAGCACCA
CTCAACCCAAAGGCCAATCGTGAGA
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