FC876246

Overview
NameFC876246
Unique NameFC876246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACL7B_MACFA (Actin-like protein 7B OS=Macaca fascicularis GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  136 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            I+ +V D G+   K G+AG+  P     S VG+        G  +K   VG E  +    L L  P++HGIV +WD ++ IW + F   +++ PEEH +L+++ PL+P +NRE
Sbjct:   49 IKAVVIDLGSQYCKCGYAGEPRPTYFISSTVGKRCPEAADAGDTRKGTLVGHELLNTETPLKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILPEEHAVLVSDPPLSPSSNRE 161          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACL7B_HUMAN (Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 39/113 (34.51%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  136 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            I+ ++ D G+   K G+AG+  P     S VG+        G  +K   VG E  +    L L  P++HGIV +WD ++ IW + F   +++ PEEH +L+++ PL+P +NRE
Sbjct:   49 IKAVIIDLGSQYCKCGYAGEPRPTYFISSTVGKRCPEAADAGDTRKWTLVGHELLNTEAPLKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILPEEHAVLVSDPPLSPSSNRE 161          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTL9_MOUSE (Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.165e-15
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  145 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +V D GTG  K GFAG   P     +I+G            + + ++G+ A+S+  +  +K PI +GIV +W+  E IW H   ++L+VA  EHP+L ++ P +P  NRE
Sbjct:   51 VVIDMGTGTCKVGFAGQSQPTYTVATILGCQPKKQATKDQSELETFIGEAARSRPELRLVK-PIRNGIVVDWEAAELIWRHILEHDLQVATHEHPLLFSDPPFSPATNRE 159          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACTL9_HUMAN (Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.596e-14
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  145 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +V D GTG  K GFAG  +P     +I+G         G      ++G+ A+     LTL  P+  GIV +WD  E IW H   ++LRVA  +HP+L ++ P +P  NRE
Sbjct:   52 VVIDMGTGTCKVGFAGQASPTYTVATILGCQPKKPATSGQSGLQTFIGEAARVLPE-LTLVQPLRSGIVVDWDAAELIWRHLLEHDLRVATHDHPLLFSDPPFSPATNRE 160          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT_CRAVI (Actin (Fragment) OS=Crassostrea virginica PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.644e-14
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:  373 KIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            KIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 34          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACT_CHERU (Actin (Fragment) OS=Chenopodium rubrum PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.644e-14
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:  373 KIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            KIWHHTFYNELRVAPEEHP+LLTEAPLNPKANRE
Sbjct:    1 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 34          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HP+L++EAP N +A RE
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKRE 131          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HP+L++EAP N +A RE
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKRE 131          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HP+L++EAP N +A RE
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKRE 131          
BLAST of FC876246 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 38/123 (30.89%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  130 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANRE 474
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HP+L++EAP N +A RE
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGDKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKRE 131          
The following BLAST results are available for this feature:
BLAST of FC876246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
ACL7B_MACFA1.886e-1535.40Actin-like protein 7B OS=Macaca fascicularis GN=AC... [more]
ACL7B_HUMAN3.216e-1534.51Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE... [more]
ACTL9_MOUSE7.165e-1535.45Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2... [more]
ACTL9_HUMAN1.596e-1437.27Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2... [more]
ACT_CRAVI4.644e-1497.06Actin (Fragment) OS=Crassostrea virginica PE=2 SV=... [more]
ACT_CHERU4.644e-1497.06Actin (Fragment) OS=Chenopodium rubrum PE=3 SV=1[more]
ACL6B_RAT4.806e-1130.89Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE4.806e-1130.89Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_BOVIN4.806e-1130.89Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACL6B_HUMAN8.198e-1130.89Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]

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Properties
Property NameValue
Genbank descriptionC32002C11EF DevOvary1 Citrus clementina cDNA clone C32002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876246 ID=FC876246; Name=FC876246; organism=Citrus clementina; type=EST; length=475bp
GGTTGCCAATTCGAACCCAACGTAAGGCTGTGAGAGCTGCGCGGGTAAGC
TGAGACCATCTCAGGGAACGTGAATTCTAGTGTTTCGATAAGTGTATTCT
CTAGCAGTCACTAGAAGATGGCAGATACCGAGGATATTCAGCCTCTTGTC
TGCGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGACGC
TCCAAGGGCTGTGTTCCCTAGCATTGTTGGCCGGCCTCGTCATACTGGAG
TCATGGTTGGCATGGGGCAGAAAGATGCATACGTTGGTGATGAAGCTCAG
TCTAAGCGTGGTATTTTGACTTTGAAGTATCCAATTGAGCATGGAATTGT
TAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTTTACAATG
AACTTCGCGTTGCTCCAGAAGAACATCCTATTCTCCTCACTGAAGCACCA
CTCAACCCAAAGGCCAATCGTGAGA
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