FC876248

Overview
NameFC876248
Unique NameFC876248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11648 contig Ccv1_Contig11648:356..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.799e-65
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F  ++ER+ E+     +FTNVY+KN  E
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200          

HSP 2 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V  +  R     + GA      N++IKN  + +D + L D F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG   +K ER TE+        Q + T     N+YVKNL +
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303          

HSP 3 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 71/205 (34.63%), Postives = 113/205 (55.12%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +   ++ D +L DLF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV    RK+ER     Q+  TN Y++ ++
Sbjct:  191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.349e-65
Identity = 117/192 (60.94%), Postives = 154/192 (80.21%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSE 643
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH + K++R ++  + K  FTNVY+KNL +
Sbjct:   47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQ 238          

HSP 2 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 65/209 (31.10%), Postives = 117/209 (55.98%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            G  ++++ +L+A + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKNLD+ I  +     F  FG I S  ++ D  G+S+G+GFV +   +SAQ A++++N   +  +++YVG   +K ER+ E+ +          SK+   N+YVKNL++
Sbjct:  134 GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 341          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.349e-65
Identity = 116/195 (59.49%), Postives = 154/195 (78.97%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH + K++R ++  + K  FTN+Y+KN+    T
Sbjct:   50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVT 244          

HSP 2 Score: 106.686 bits (265), Expect = 1.104e-22
Identity = 63/209 (30.14%), Postives = 116/209 (55.50%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            G  ++++ +L++ + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   NI+IKN+D  +  +     F  FG I S  ++ D  G+S+G+GFV +   ESAQ A+++++   +  +++YVG   +K ER+ E+ +          SK+   N+YVKNL++
Sbjct:  137 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 344          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.349e-65
Identity = 123/194 (63.40%), Postives = 157/194 (80.93%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS--KFTNVYVKNLSESTT 652
            +SLYVGDL+ +V +S L DLFNQ+  V ++RVCRDL T RSLGY YVNF+N ++A+RA+E LN+ P+  +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKVA D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R      +   FTNVYVKNL +  T
Sbjct:   45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEIT 237          

HSP 2 Score: 119.398 bits (298), Expect = 1.646e-26
Identity = 70/210 (33.33%), Postives = 118/210 (56.19%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ-------SKF-----TNVYVKNLSES 646
            G  ++++ +L+A++ +  LY+ F+  G ++S +V  D+   RS GYG+V F   + A  A++ LN   LN K + V +  R     +S +G      N+++KNL K I    L  TF  +G+I S  V  D +G S+ +GFV F + E+A  A+EK+NG+ L +  +YVG   +K +R+ E+ +       S+F     +N+Y+KNL +S
Sbjct:  130 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDS 338          

HSP 3 Score: 109.383 bits (272), Expect = 1.703e-23
Identity = 67/198 (33.84%), Postives = 107/198 (54.04%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNV 622
            T++YV +L   +TD +L   F + G + S  V +D S   S  +G+VNF + + AA A+E +N   L    + V      S R+  LR            K    N+++KNLD +++ + L + FS +GN+ SCKV  +  G S+G+GFV + N E A  A++++NG ++  K +YV    RK+ER   + QS FT +
Sbjct:  225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHL-QSLFTQI 420          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.349e-65
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F  ++ER+ E+     +FTNVY+KN  E
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGE 200          

HSP 2 Score: 130.954 bits (328), Expect = 5.466e-30
Identity = 77/209 (36.84%), Postives = 118/209 (56.46%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V        R+  L  R     N++IKN  + +D + L + F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG   +K ER TE+        Q + T     N+YVKNL +
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303          

HSP 3 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 70/205 (34.15%), Postives = 113/205 (55.12%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +   ++ D +L +LF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV    RK+ER     Q+  TN Y++ ++
Sbjct:  191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.068e-65
Identity = 117/190 (61.58%), Postives = 153/190 (80.53%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNL 637
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH + K++R ++  + K  FTNVY+KNL
Sbjct:   53 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNL 242          

HSP 2 Score: 115.161 bits (287), Expect = 3.104e-25
Identity = 68/209 (32.54%), Postives = 116/209 (55.50%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            G  ++++ +L++ + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKNLD  ID       F  FG I S  ++ D  G+S+G+GFV F   ESAQ A+E++N   +  +++YVG   +K ER+ E+ +          SK+   N+YVKNL++
Sbjct:  140 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.068e-65
Identity = 120/190 (63.16%), Postives = 152/190 (80.00%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643
            SLYVGDL ++VT++ LY+ F+  G V+S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F  ++ER+ E+     +FTNVY+KN  E
Sbjct:   12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 200          

HSP 2 Score: 118.627 bits (296), Expect = 2.807e-26
Identity = 68/210 (32.38%), Postives = 116/210 (55.24%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE------------IXQSKFTNVYVKNLSES 646
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GY +V+F   + A +A+E +N   LN + + V  +  R     + GA      N++IKN  + +D ++L + FS FG  LS KV  D NG+SKG+GFV ++  E A KA+E++NG  ++ K ++VG   +K ER  E            I + +  N+Y+KNL ++
Sbjct:   97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304          

HSP 3 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 67/204 (32.84%), Postives = 113/204 (55.39%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +    V D  L +LF+Q G+ +SV+V RD    +S G+G+V++   ++A +A+E +N   ++GK I                R     +   + +    N++IKNLD  ID + L   FS FG+I S KV  + +G+SKG+GFV F + E A KA+ ++NG ++  K +YV    RK+ER     ++  TN Y++ ++
Sbjct:  191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 387          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.007e-65
Identity = 118/190 (62.11%), Postives = 153/190 (80.53%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F  ++ER+ E+     +FTNVY+KN  E
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200          

HSP 2 Score: 121.709 bits (304), Expect = 3.316e-27
Identity = 72/209 (34.45%), Postives = 117/209 (55.98%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA++ +N   LN + + V  +  R     + GA      N++IKN  + +D + L + F  +G  LS KV TD +G+S+G+GFV F+  E AQKA++ +NG  LN K ++VG   +K ER TE+        Q + T     N+YVKNL +
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303          

HSP 3 Score: 107.457 bits (267), Expect = 6.471e-23
Identity = 68/205 (33.17%), Postives = 112/205 (54.63%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +   ++ D +L + F Q G  +SV+V  D    +S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   F+ FG+I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV    RK+ER     Q+  TN Y++ ++
Sbjct:  191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.233e-65
Identity = 114/195 (58.46%), Postives = 157/195 (80.51%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN++   +  +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++  + K  FTN+YVKN++   T
Sbjct:   60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVT 254          

HSP 2 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 71/240 (29.58%), Postives = 109/240 (45.42%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-----------------------------------------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS 607
            T++YV ++   VTD +   LF + G V S  + RD  T +S G+G+VNF++ ++A++A++ LN    +G+ +   R    H R+  LRKS               N++IKNLD  +D + L   FS FG I S KV  D                                                 G+SKG+GFV F N + A KA+ ++N  ++N+K +YV    RK  R  ++ QS
Sbjct:  242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQS 481          

HSP 3 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 59/212 (27.83%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS------------KFTNVYVKNLSE 643
            G  ++++ +L+  + +  L+D F   G ++S +V +D     S GYG+V++   + A++A++ +N   LN K + V   H  P           K+   NI++KN++  +        F  +G++ S  +A D   G+S+G+GFV F + E A KA+++LN    + + +YVG   +K ER+ E+ +S            +  N+Y+KNL +
Sbjct:  147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV--GHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDD 355          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.233e-65
Identity = 118/190 (62.11%), Postives = 152/190 (80.00%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643
            SLYVGDL  + T++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F  ++ER+ E+     +FTNVY+KN  E
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200          

HSP 2 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V  +  R     + GA      N++IKN  + +D + L D F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG   +K ER TE+        Q + T     N+YVKNL +
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303          

HSP 3 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 71/205 (34.63%), Postives = 113/205 (55.12%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +   ++ D +L DLF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV    RK+ER     Q+  TN Y++ ++
Sbjct:  191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387          
The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PABP1_BOVIN1.799e-6562.63Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABP_ASPTN2.349e-6560.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL2.349e-6559.49Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_ARATH2.349e-6563.40Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP1_MOUSE2.349e-6562.63Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP_ASPNC3.068e-6561.58Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN3.068e-6563.16Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABPB_XENLA4.007e-6562.11Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP_MAGGR5.233e-6558.46Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB5.233e-6562.11Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002D03EF DevOvary1 Citrus clementina cDNA clone C32002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bp
ATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTG
GGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTG
GAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGG
TCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTC
TCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCA
TTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTAT
GTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATATTT
TCATTAAGAACCTAGATAAGGCCATTGATCACAAAGCTTTGCACGATACC
TTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTTGCTACAGACCTCAA
TGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGACAATGAGGAGTCTG
CCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTATTGAATGACAAGCAA
GTTTATGTTGGACATTTCCTCCGCAAGCAGGAGAGAGATACTGAGATCAA
NCAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCAGAGTCAACAA
CTGA
back to top