FC876248

Overview
NameFC876248
Unique NameFC876248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11648 contig Ccv1_Contig11648:356..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.206e-61
Identity = 111/195 (56.92%), Postives = 155/195 (79.49%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ--SKFTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ L+++FN +G V S+RVCRD  TRRSLGY YVN+ NA +  RALE LN++ + G+  R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCKV TD NG+S+G+ FV +   E+A  AI+ +NGMLLNDK+VYVGH + K+ER +++ +  ++FTNVY+KN+    T
Sbjct:   45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 239          

HSP 2 Score: 107.842 bits (268), Expect = 4.955e-23
Identity = 63/186 (33.87%), Postives = 99/186 (53.23%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI-------------RVMYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 586
            T++Y+ +++  VTD++  DL    G  +SV + RD     S G+G+VN+ N + A +A++ LN   +NGK +              +  SH +  L    KS   N+++KNLD   D   L   F AFG I S KV  D +G S+G+GFV + + + A KA+ ++NG ++  K +YV    RK  R
Sbjct:  227 TNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411          

HSP 3 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 63/210 (30.00%), Postives = 109/210 (51.90%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI------------XQSKFTNVYVKNLSE 643
            G  ++++ +L+ ++ +  L+D F   G ++S +V  D    +S G+ +V++S  + A  A++ +N   LN K + V + H     R S          N++IKN+D  +      D    FG  +S  ++ D  G SKG+GFV ++N ESA+KA+++LN   +N K++Y G    K ER+ E+             +S   N+YVKNL +
Sbjct:  132 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDD 339          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.206e-61
Identity = 110/190 (57.89%), Postives = 149/190 (78.42%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS--KFTNVYVKNLSE 643
            SLY+GDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSL Y Y+NF    +A RAL+ +NF  + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+DTFSAFGNILSCKV  D +G S+GYGFV F+  E+A +AI+ +NGMLLND++V+VGHF  ++ER+ E      +FTNVY+KN  E
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGE 200          

HSP 2 Score: 124.79 bits (312), Expect = 3.917e-28
Identity = 72/209 (34.45%), Postives = 118/209 (56.46%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLRKSGA----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE------------IXQSKFTNVYVKNLSE 643
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA++ +N   LN + + V +  S R+  L          N++IKN  + +D K L + FSAFGN LS KV  D +G+S+G+GFV + N E AQKA+ ++NG  +N + +YVG   ++ ER +E            I + +  N+YVKNL +
Sbjct:   97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDD 303          

HSP 3 Score: 108.997 bits (271), Expect = 2.224e-23
Identity = 65/204 (31.86%), Postives = 111/204 (54.41%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +   ++ D +L ++F+  G  +SV+V  D  + RS G+G+VN+ N +EA +A+  +N   +NG+ I V  + +                   + +    N+++KNLD  ID   L   F  +G I S KV T+  G SKG+GFV F + E A KA+ ++NG +++ K +YV    RK+ER     ++  TN Y++ L+
Sbjct:  191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER-----KAILTNQYMQRLA 387          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.058e-61
Identity = 110/190 (57.89%), Postives = 149/190 (78.42%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS--KFTNVYVKNLSE 643
            SLY+GDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSLGY Y+NF    +A RAL+ +NF  + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAFG+ILSCKV  D  G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF  ++ER+ E      +FTNVY+KN  E
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGE 200          

HSP 2 Score: 123.635 bits (309), Expect = 8.726e-28
Identity = 73/210 (34.76%), Postives = 119/210 (56.67%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLRKSGA----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE------------IXQSKFTNVYVKNLSE 643
            G  ++++ +L+ ++ +  LYD F+  G ++S +V C +  +R   GYG+V+F   + A RA++ +N   LN + + V +  S R+  L          N++IKN  + +D K L + FSAFGN LS KV  D +G+S+G+GFV + N E AQKA+ ++NG  +N + VYVG   ++ ER  E            I + +  N+YVKNL +
Sbjct:   97 GVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR---GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDD 303          

HSP 3 Score: 110.538 bits (275), Expect = 7.645e-24
Identity = 65/204 (31.86%), Postives = 113/204 (55.39%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +   ++ D +L ++F+  G  +SV+V  D ++ RS G+G+VN+ N +EA +A+  +N   +NG+ + V  + +                   + +    N+++KNLD  ID   L   FS +G I S KV T+  G SKG+GFV F + E A KA+ ++NG +++ K +YV    RK+ER     ++  TN Y++ L+
Sbjct:  191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER-----KAILTNQYMQRLA 387          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.688e-61
Identity = 112/194 (57.73%), Postives = 152/194 (78.35%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD  TRRSLGY YVNF NA +  RA+E LN++ +  +P R+M+S RDP+LR++G GNIFIKNLD  ID+KALHDTF+AFGNILSCKVAT+  G S GYGFV ++  E+A+ AI+ +NGMLLNDK+VYVGH + ++ER  +I +++  FTNVY KN+    T
Sbjct:   47 TSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVT 239          

HSP 2 Score: 107.457 bits (267), Expect = 6.471e-23
Identity = 63/210 (30.00%), Postives = 115/210 (54.76%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS----------KF--TNVYVKNLSES 646
            G  ++++ +L+A + +  L+D F   G ++S +V  + +   SLGYG+V++  A+ A  A++ +N   LN K + V +      R   + ++ A   N++ KN+D  +        F+ FG I SC +  D +G+SKG+GFV F++   AQKA+++L+      ++++V    +K ER+ E+ +S          KF   N+Y+KN+ ES
Sbjct:  133 GQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG--SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPES 340          

HSP 3 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 58/190 (30.53%), Postives = 105/190 (55.26%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 598
            T++Y  +++  VTD +   LF + G++ S  + RD    +S G+G+VNF +  EA +A++ L+ +   G+ + V      S R+  LR+S               N+++KN+ ++ D + L + F+ FG I SCK+    +G S+G+GFV +   E A KA+ ++NG +L+++ +YV    RK  R  ++
Sbjct:  227 TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRD-EDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQL 415          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.820e-61
Identity = 110/193 (56.99%), Postives = 151/193 (78.24%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ--SKFTNVYVKNLSESTT 652
            SLYVG+LE  V+++ LYD+F+ +G V S+RVCRD  T  SLGY YVNF + +   +A+E LN+T + GKP R+M+S RDPSLRK G+GNI+IKNL  AID+K+LH+TFS FGNILSCKVATD NG S+G+GFV F+NE  A+ AIE ++GML+ND++VYV   + K++R +++ +  +KFTNVYVKN+ + T+
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETS 231          

HSP 2 Score: 98.9821 bits (245), Expect = 2.302e-20
Identity = 60/192 (31.25%), Postives = 99/192 (51.56%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD----------------PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ 604
            T++YV +++   +  +  +LF + G++ S  + +D S  +  G+G+VNF +   AA+A++ LN     G+ + V  + +                   L K    N+F+KNLD +ID + L + F+ FG I S KV  D  G S+G+GFV F   E A KAI + N  ++  K +YV    RK+ R  ++ Q
Sbjct:  219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQ 409          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 233.032 bits (593), Expect = 1.021e-60
Identity = 109/195 (55.90%), Postives = 155/195 (79.49%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD  T+ SLGY YVNF++ +   +A+E LN+TP+ G+  R+M+S RDPSLRK G+GNIFIKNL   ID+KAL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV   L ++ERD+++ ++K  +TN+YVKN++  TT
Sbjct:   37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231          

HSP 2 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 64/192 (33.33%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----------------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ 604
            T+LYV ++ +  TD Q  +LF + G +VS  + +D   +   G+G+VN+   ++A +A+E LN + LNG+ + V                  ++R   + K    N+F+KNLD ++D + L + F+ +G I S KV    NG+SKG+GFV F   E A KAI + N  ++  K +YV    RK  R +++ Q
Sbjct:  219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLK-GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQ 409          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.129e-59
Identity = 108/195 (55.38%), Postives = 153/195 (78.46%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  +++SLGY YVN+   ++  +A+E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL  AID+KALHDTFSAFG ILS KVATD  GQSK +GFV ++ EE+AQ AIE +NGMLLND++VYVG  + K++R++++ + K  +TN+YVKN+  + T
Sbjct:   66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYT 260          

HSP 2 Score: 113.235 bits (282), Expect = 1.179e-24
Identity = 67/209 (32.06%), Postives = 115/209 (55.02%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----RVMYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            G  ++++ +L   + +  L+D F+  G+++SV+V  D    +S  +G+V++   + A  A+E +N   LN + +     V    R+  L +  A   NI++KN+D A   K   + F+ FG I S  +  D  G+SKG+GFV F+  E+A KA+E+LN   +N +++YVG   +K+ER  E+ +          SK+   N++VKNL E
Sbjct:  153 GDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDE 360          

HSP 3 Score: 112.079 bits (279), Expect = 2.627e-24
Identity = 66/192 (34.38%), Postives = 105/192 (54.69%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD----------------PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ 604
            T++YV +++   T+ +  +LF   G++ S+ + +D +  +S G+G+VNF   + AA+A+E LN   +NG+ I V  + +                   L K    N+F+KNLD+ ID + L + F  FG I S KV  D  G+SKG+GFV F   E A KAI ++N  ++N K +YV    RK  R +++ Q
Sbjct:  248 TNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQ 438          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.285e-59
Identity = 109/191 (57.07%), Postives = 152/191 (79.58%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLS 640
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  T++SLGY YVNF    + +RA+E LN++ ++G+P R+M+S RDPSLR++G GNIFIKNL  AID+KALHDTFSAFG ILSCKVATD  GQSK +GFV ++  E+A+ AIE +NGMLLND++V+VG  + K++R+++  + K  FTNVYVKNL+
Sbjct:   57 SASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLA 247          

HSP 2 Score: 105.916 bits (263), Expect = 1.883e-22
Identity = 63/210 (30.00%), Postives = 117/210 (55.71%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSES 646
            G  ++++ +L   + +  L+D F+  G+++S +V  D    +S  +G+V++  A+ A  A+E +N   LN + + V    S RD   +    K+   N+++KNL   +D+    + F  FG + S  + TD  G+S+G+GFV F+N ESA  A++++N   ++ +++YVG   +K+ER  E+ +          SK+   N++VKNL +S
Sbjct:  144 GDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDS 352          

HSP 3 Score: 105.916 bits (263), Expect = 1.883e-22
Identity = 64/192 (33.33%), Postives = 102/192 (53.12%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ 604
            T++YV +L   V +++  ++F   G V SV +  D    +S G+G+VNF N + A  A++ +N   ++G+ +                R+  S R   L K    N+F+KNLD +ID + L + F  FG I S +V  D  G+SKG+GFV F + E A KAI ++N  ++  K +YV    RK  R +++ Q
Sbjct:  239 TNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETD-QEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQ 429          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.604e-59
Identity = 105/190 (55.26%), Postives = 149/190 (78.42%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNL 637
            T SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  +++SLGY YVN+   ++  +A+E LN++P+ G+P R+M+S RDPS R+SG GNIFIKNL  AID+KALHDTFS FG ILSCKVATD  GQSK +GFV ++  E+A+ AIE +NGMLLND++V+VG  + K++R+++  + K  FTN+YVKN+
Sbjct:   51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNI 240          

HSP 2 Score: 105.145 bits (261), Expect = 3.212e-22
Identity = 65/192 (33.85%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV---------------MYSH-RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ 604
            T++YV +++   ++  L  LF   G + S+ + +D +  +S G+G+VN+   + A +A+E LN   +NG+ I V                Y + R   L K    N+FIKNLD  ID + L + F  FG I S +V  D  G+SKG+GFV F + E A KAI ++N  +   K +YV    RK  R +++ Q
Sbjct:  233 TNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKD-AEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQ 423          

HSP 3 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 62/210 (29.52%), Postives = 116/210 (55.24%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSES 646
            G  ++++ +L   + +  L+D F+  G+++S +V  D    +S  +G+V++  A+ A  A+E +N   LN + + V    S +D   +    K+   NI++KN+D     + L   F+ +G I S  +  D  G+SKG+GFV ++  E+A KA+E+LN   +N +++YVG   +K+ER  E+ +          SK+   N+++KNL ++
Sbjct:  138 GDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 346          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 5.604e-59
Identity = 108/194 (55.67%), Postives = 147/194 (75.77%), Query Frame = 2
Query:   68 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643
            + T SLYVGDL  +VT++ LY+ F+  G ++S+R+CRDL T  S  Y YVNF + ++A  AL+ +NF  + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILSC V  D NG SKGYGFV F+  E+A++AI+K+NGMLLN ++V+VG F  ++ER+ E+     +F NVY+KN  E
Sbjct:    8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGE 200          

HSP 2 Score: 131.339 bits (329), Expect = 4.185e-30
Identity = 76/209 (36.36%), Postives = 118/209 (56.46%), Query Frame = 2
Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS------------KFTNVYVKNLSE 643
            G  +++V +L+ ++ +  LYD  +  G ++S  V  D     S GYG+V+F   + A RA++ +N   LNG+ + V  +  R     + GA      N++IKN  + +D + L D F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG   +K ER TE+ ++            +  N+YVKNL +
Sbjct:   97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303          

HSP 3 Score: 110.923 bits (276), Expect = 5.853e-24
Identity = 67/203 (33.00%), Postives = 110/203 (54.19%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            ++Y+ +   ++ D +L DLF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I                R     +   + +    N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV    RK+ER     Q+  TN Y++ ++
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAYLTNEYMQRMA 387          
The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PABP_CRYNE1.206e-6156.92Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA1.206e-6157.89Embryonic polyadenylate-binding protein A OS=Xenop... [more]
EPABB_XENLA2.058e-6157.89Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_USTMA2.688e-6157.73Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASHGO7.820e-6156.99Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_YEAST1.021e-6055.90Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_LODEL1.129e-5955.38Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU3.285e-5957.07Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICST5.604e-5955.26Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN5.604e-5955.67Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC32002D03EF DevOvary1 Citrus clementina cDNA clone C32002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bp
ATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTG
GGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTG
GAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGG
TCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTC
TCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCA
TTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTAT
GTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATATTT
TCATTAAGAACCTAGATAAGGCCATTGATCACAAAGCTTTGCACGATACC
TTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTTGCTACAGACCTCAA
TGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGACAATGAGGAGTCTG
CCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTATTGAATGACAAGCAA
GTTTATGTTGGACATTTCCTCCGCAAGCAGGAGAGAGATACTGAGATCAA
NCAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCAGAGTCAACAA
CTGA
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