FC876248 | Citrus Genome Database

Overview


Name	FC876248
Unique Name	FC876248
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	654

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig11648	contig	Ccv1_Contig11648:356..1009.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.559e-59
Identity = 105/190 (55.26%), Postives = 149/190 (78.42%), Query Frame = 2

Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNL 637
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  +++SLGY YVN+   ++  +A+E LN+ P+ G+P R+M+S RDPS R+SG GNIFIKNL  AID+KALHDTFSAFG ILSCKVATD  GQSK +GFV ++  E+A+ AIE +NGMLLND++V+VG  + K++R+++  + K  FTN+YVKN+
Sbjct:   51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNI 240

HSP 2 Score: 112.079 bits (279), Expect = 2.627e-24
Identity = 65/192 (33.85%), Postives = 103/192 (53.65%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD----------------PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ 604
            T++YV +++ N ++     LF+  G++ S+ + +D    +S G+G+VNF + + A +A+E LN   +NG+ I V  + +                   L K    N+F+KNLD  ID + L + F  FG I S KV  D  G+SKG+GFV F   E A KAI ++N  ++N K +YV    RK  R +++ Q
Sbjct:  233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQ 423

HSP 3 Score: 106.686 bits (265), Expect = 1.104e-22
Identity = 64/210 (30.48%), Postives = 116/210 (55.24%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS------------KFTNVYVKNLSES 646
            G  ++++ +L   + +  L+D F+  G+++S +V  D    +S  +G+V++  A+ A  A+E +N   LN + + V    S +D   +    K+   NI++KN+D     ++    FS FG I S  +  D +G+SKG+GFV F++ ESA KA+E+LN   +N +++YVG   +K+ER  E+ +             +  N++VKNL ++
Sbjct:  138 GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDT 346

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BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.380e-57
Identity = 102/193 (52.85%), Postives = 147/193 (76.17%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            SLYVG+L+ N+T++ LYD+F+ +G + S+RVCRD  T+ SLGY YVN+++ +   +A++ LN+  +NG+P R+M+S RDP++RK G+GNIFIKNL  AID+KALH+TFS FG +LSCKVA D NG S+G+GFV F  E  A+ AIE +NGML+N  +VYV   + K++R +++ ++K  FTN+YVKN+   TT
Sbjct:   51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETT 243

HSP 2 Score: 104.76 bits (260), Expect = 4.195e-22
Identity = 63/192 (32.81%), Postives = 100/192 (52.08%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----------------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ 604
            T++YV +++   TD +   LF+Q G++VS  + +D   +   G+G+VNF +   AA+A+E LN      + + V                   +R   L K    N+FIKNLD +ID + L + F+ +G I S +V  D  G SKG+GFV F + E A KA+ + N  ++  K +YV    RK  R +++ Q
Sbjct:  231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPK-GFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQ 421

HSP 3 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 63/210 (30.00%), Postives = 110/210 (52.38%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSES 646
            G+ ++++ +L   + +  L++ F+  G+V+S +V  D     S G+G+V+F    +A  A+E +N   +NG  + V        R   L ++ A   NI++KN+D     +     FS +G I+S  +  D  G+ KG+GFV F +  +A KA+E+LNG     + +YVG   +K ER  E+ +          +KF   N+++KNL +S
Sbjct:  136 GSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDS 344

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.380e-57
Identity = 105/190 (55.26%), Postives = 148/190 (77.89%), Query Frame = 2

Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNL 637
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  T++SLGY YVNF   ++  +A+E LN++ + G+P R+M+S RDPSLR++G GNIFIKNL  AID+KALHDTF+AFG ILSCKVATD  G SK +GFV ++  E+A+ AIE +NGMLLND++VYVG  + K++R+++  + K  FTNVY KN+
Sbjct:   50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNI 239

HSP 2 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 64/192 (33.33%), Postives = 104/192 (54.17%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV---------------MYSH-RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ 604
            T++Y  +++ + ++ +   LF   G++ S+ + +D    +S G+G+VNF N + A +A++ LN   +NG+ I V                Y + R   L K    N+FIKNLD  ID + L + F  FG+I S +V  D  G+SKG+GFV F + E A KAI ++N  ++  K +YV    RK  R +++ Q
Sbjct:  232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQ 422

HSP 3 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 63/210 (30.00%), Postives = 113/210 (53.81%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSES 646
            G  ++++ +L   + +  L+D F   G+++S +V  D     S  +G+V++  A+ A  A+E +N   LN + + V    S +D   +    K+   N++ KN+D     +     F A+G I S  +  D  G+SKG+GFV F+N ESA KA+++LN   +N +++YVG   +K+ER  E+ +          SK+   N+++KNL ++
Sbjct:  137 GDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 345

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.412e-55
Identity = 106/192 (55.21%), Postives = 139/192 (72.40%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--IXQSKFTNVYVKNLSEST 649
            SLYVGDL   VT++ LY+ F+  G ++S+R+CRD  TRRSLGY YVN+    +A RALE LNF  + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA D  G  KGYGFV F  +ESA++AI+ +NGM LN ++++VG F   +ER+ E      + T+  VK+  E T
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDT 193

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BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.666e-52
Identity = 102/187 (54.55%), Postives = 138/187 (73.80%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ--SKFTNVYVKN 634
            SLYVGDL A+VT+  L+  F+ +G V+S+R+CRD  TRRSLGY YVNF    +A +AL+ +NF  + GK IR+M+S RD  LR+SG GN+FIKNLDK+ID+K L++ FSAFG ILS KV +D  G SKGY FV F N+ +A +AIE++NG LL   +V+VG F  +++R+ E+    S+FTNVY+KN
Sbjct:   11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKN 196

HSP 2 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 70/210 (33.33%), Postives = 118/210 (56.19%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ------------SKFTNVYVKNLSES 646
            G  ++++ +L+ ++ +  LY+ F+  G+++S +V  D   + S GY +V+F N   A RA+E +N   L G  + V        R+  LR   +   N++IKN    +D + L D FS +G  LS KV TD +G+SKG+GFV FD+ E+A+KA+E++NG  +N + ++VG   +K ER  E+ Q             +   +Y+KNL ++
Sbjct:   96 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDT 303

HSP 3 Score: 95.1301 bits (235), Expect = 3.324e-19
Identity = 56/177 (31.64%), Postives = 100/177 (56.50%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPS----------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            T++Y+ +   ++ D +L D+F++ G+ +SV+V  D S+ +S G+G+V+F + + A +A+E +N   +NG+ I V  + +                   +R      ++IKNLD  ID + L + FS+FG+I   KV  +  GQSKG+G + F + E A KA+ ++NG +L  K + +
Sbjct:  190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.383e-49
Identity = 103/191 (53.93%), Postives = 132/191 (69.11%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---XQSKFTNVYVKNLSE 643
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F   +ER  E+    ++ FTNV+VKN+ +
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208

HSP 2 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 65/212 (30.66%), Postives = 113/212 (53.30%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTN-------------VYVKNLSES 646
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG   +K ER  E+ + +F               +Y+KNL E+
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL-RRRFERLRLKEKSRPPGVPIYIKNLDET 312

HSP 3 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.383e-49
Identity = 103/191 (53.93%), Postives = 132/191 (69.11%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---XQSKFTNVYVKNLSE 643
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F   +ER  E+    ++ FTNV+VKN+ +
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208

HSP 2 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 65/212 (30.66%), Postives = 113/212 (53.30%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTN-------------VYVKNLSES 646
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG   +K ER  E+ + +F               +Y+KNL E+
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL-RRRFERLRLKEKSRPPGVPIYIKNLDET 312

HSP 3 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.383e-49
Identity = 103/191 (53.93%), Postives = 132/191 (69.11%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---XQSKFTNVYVKNLSE 643
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F   +ER  E+    ++ FTNV+VKN+ +
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208

HSP 2 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 65/212 (30.66%), Postives = 113/212 (53.30%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTN-------------VYVKNLSES 646
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG   +K ER  E+ + +F               +Y+KNL E+
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL-RRRFERLRLKEKSRPPGVPIYIKNLDET 312

HSP 3 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.383e-49
Identity = 103/191 (53.93%), Postives = 132/191 (69.11%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---XQSKFTNVYVKNLSE 643
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F   +ER  E+    ++ FTNV+VKN+ +
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208

HSP 2 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 65/212 (30.66%), Postives = 113/212 (53.30%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTN-------------VYVKNLSES 646
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG   +K ER  E+ + +F               +Y+KNL E+
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL-RRRFERLRLKEKSRPPGVPIYIKNLDET 312

HSP 3 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.383e-49
Identity = 103/191 (53.93%), Postives = 132/191 (69.11%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---XQSKFTNVYVKNLSE 643
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F   +ER  E+    ++ FTNV+VKN+ +
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208

HSP 2 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 65/212 (30.66%), Postives = 113/212 (53.30%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTN-------------VYVKNLSES 646
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG   +K ER  E+ + +F               +Y+KNL E+
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL-RRRFERLRLKEKSRPPGVPIYIKNLDET 312

HSP 3 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

The following BLAST results are available for this feature:

BLAST of FC876248 vs. ExPASy Swiss-Prot

BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175


Match Name	E-value	Identity	Description
PABP_CANAL	9.559e-59	55.26	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_KLULA	1.380e-57	52.85	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_DEBHA	1.380e-57	55.26	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PAP1M_HUMAN	6.412e-55	55.21	Polyadenylate-binding protein 1-like 2 OS=Homo sap...	[more]
PAB4L_HUMAN	8.666e-52	54.55	Polyadenylate-binding protein 4-like OS=Homo sapie...	[more]
PABP5_PONPY	1.383e-49	53.93	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	1.383e-49	53.93	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	1.383e-49	53.93	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	1.383e-49	53.93	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]
PABP5_HUMAN	1.383e-49	53.93	Polyadenylate-binding protein 5 OS=Homo sapiens GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32002D03EF DevOvary1 Citrus clementina cDNA clone C32002D03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bp
ATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTG
GGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTG
GAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGG
TCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTC
TCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCA
TTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTAT
GTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATATTT
TCATTAAGAACCTAGATAAGGCCATTGATCACAAAGCTTTGCACGATACC
TTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTTGCTACAGACCTCAA
TGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGACAATGAGGAGTCTG
CCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTATTGAATGACAAGCAA
GTTTATGTTGGACATTTCCTCCGCAAGCAGGAGAGAGATACTGAGATCAA
NCAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCAGAGTCAACAA
CTGA