FC876262

Overview
NameFC876262
Unique NameFC876262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:17..483. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  147 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSF-GMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVV 461
            +FY  TCP   +II+  +    +     A S LR  FHDC V+ CDAS+LLD+++   +EK+   +    R F  I+ +K A+ER CP  VSCADIL ++ +  V+
Sbjct:    5 DFYSRTCPSVFNIIKNVIVDELQTDPRIAASILRLHFHDCFVRGCDASILLDTSKSFRTEKDAAPNVNSARGFNVIDRMKTALERACPRTVSCADILTIASQISVL 110          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER16_ARATH (Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  138 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM--DRSFGMRNFRYIENIKEAVERE--CPGVVSCADILVLSGRDGVV 461
            L  NFY+ +CP  E I+R  V+  +++   TA + LR  FHDC V+ CDAS+LL S     SEK+   D+S     F  +   K+A++R+  C   VSCADIL L+ RD VV
Sbjct:   25 LQTNFYRKSCPNVETIVRNAVRQKFQQTFVTAPATLRLFFHDCFVRGCDASILLASP----SEKDHPDDKSLAGDGFDTVAKAKQALDRDPNCRNKVSCADILALATRDVVV 132          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.347e-14
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  138 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGVVSCADILV 437
            L  ++Y  TCP+ E+ + + V         TA   LR  FHDC V  CDAS+L+ ST +  SE++ D  RS     F  I  IK AVE +CP +VSC+DILV
Sbjct:   22 LSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMVDGCDASILVASTPRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILV 123          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.347e-14
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  147 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVV 461
            +FY  TCP   DII   +    +     A S LR  FHDC V+ CDAS+LLD++    +EK+    +   R F  I+ +K A+ER CPG VSCADIL ++ +  V+
Sbjct:   34 DFYFGTCPFVFDIIGNIIVDELQTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANSARGFNVIDRMKVALERACPGRVSCADILTIASQISVL 139          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.709e-14
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 3
Query:  138 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVA 464
            L  NFY  +C  AE ++R  V+             LR  FHDC VQ CDAS+L+       +EK    +  +  F  I+  K A+E  CP  VSCADI+ L+ RD V A
Sbjct:   29 LSFNFYASSCSVAEFLVRNTVRSATSSDPTIPGKLLRLFFHDCFVQGCDASVLIQGNS---TEKSDPGNASLGGFSVIDTAKNAIENLCPATVSCADIVALAARDAVEA 134          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14
Identity = 43/110 (39.09%), Postives = 54/110 (49.09%), Query Frame = 3
Query:  138 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVAL 467
            L   FY  +CP A   I+  V            S +R  FHDC VQ CDAS+LL    +         +  +R F  ++NIK  VE  C   VSCADIL ++ RD VVAL
Sbjct:   25 LSATFYDTSCPNALSTIKSAVTAAVNSEPRMGASLVRLHFHDCFVQGCDASVLLSGQEQNAGPN----AGSLRGFNVVDNIKTQVEAICSQTVSCADILAVAARDSVVAL 130          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER2_ORYSI (Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14
Identity = 43/110 (39.09%), Postives = 54/110 (49.09%), Query Frame = 3
Query:  138 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVAL 467
            L   FY  +CP A   I+  V            S +R  FHDC VQ CDAS+LL    +         +  +R F  ++NIK  VE  C   VSCADIL ++ RD VVAL
Sbjct:   25 LSATFYDTSCPNALSTIKSAVTAAVNSEPRMGASLVRLHFHDCFVQGCDASVLLSGQEQNAGPN----AGSLRGFNVVDNIKTQVEAICSQTVSCADILAVAARDSVVAL 130          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  147 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVV 461
            +FY  TCP   +II + +    +     A S LR  FHDC V+ CDAS+LLD++    +EK+       +R F  I+ +K A+ER CP  VSCADI+ ++ +  V+
Sbjct:   34 DFYFRTCPPIFNIIGDTIVNELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNKNSVRGFDVIDRMKAAIERACPRTVSCADIITIASQISVL 139          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.661e-13
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  138 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKE--MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVAL 467
            L  NFY  TCP+  DIIR+ +      +  TA + +R  FHDC    CDAS+L+ ST    +E++  ++ S     F  I   K A+E  CP  VSC+DI+ ++ RD ++ +
Sbjct:   21 LTTNFYSKTCPRFLDIIRDTITNKQITNPTTAAAVIRLFFHDCFPNGCDASVLISSTAFNTAERDSSINLSLPGDGFDVIVRAKTALELACPNTVSCSDIISVATRDLLITV 132          
BLAST of FC876262 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  150 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVAL 467
            FY  +CP+A   I+  V            S LR  FHDC VQ CDAS+LL      + +  +  +  +R F  I++IK  +E  C   VSCADIL ++ RD VVAL
Sbjct:   27 FYDTSCPRALATIKSGVMAAVTSDPRMGASLLRLHFHDCFVQGCDASVLLSG----MEQNAIPNAGSLRGFGVIDSIKTQIEAICKQTVSCADILTVAARDSVVAL 128          
The following BLAST results are available for this feature:
BLAST of FC876262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
PERE5_ARMRU1.962e-1439.62Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER16_ARATH1.962e-1442.86Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=... [more]
PER6_ARATH3.347e-1443.14Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER22_ARATH3.347e-1441.51Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER46_ARATH5.709e-1438.53Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]
PER2_ORYSJ9.738e-1439.09Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER2_ORYSI9.738e-1439.09Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX1... [more]
PER23_ARATH9.738e-1438.68Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PER31_ARATH1.661e-1336.61Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER1_HORVU2.833e-1339.62Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002E11EF DevOvary1 Citrus clementina cDNA clone C32002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876262 ID=FC876262; Name=FC876262; organism=Citrus clementina; type=EST; length=467bp
GAAGGTTGGTCACCTTTAGTGAGTGAAGAGTAGAAGAGAAAATGGGTACG
AAAGCTGTCTTCTTGCTTTTAGCTTTGCTTTCCTTCTCAGCTGTGTCTCT
GAGGTCTGCTTTGGCAGAAAATGAAGAGGACCCAGGTCTTGTTATGAATT
TTTACAAGGATACATGCCCTCAGGCCGAGGACATTATCAGGGAACAAGTT
AAGCTTCTGTACAAGCGCCACAAGAACACTGCATTTTCTTGGCTTAGAAA
CATTTTCCATGACTGTGCTGTCCAGTCTTGTGATGCTTCACTGCTTCTGG
ACTCGACAAGAAAGACCTTGTCTGAGAAGGAGATGGACAGGAGCTTTGGT
ATGAGGAACTTCAGGTACATTGAGAACATCAAAGAAGCTGTTGAAAGAGA
GTGCCCTGGTGTTGTTTCCTGTGCTGATATCCTTGTCCTGTCCGGTAGAG
ATGGCGTTGTTGCGCTT
back to top