FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOBM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=dxr PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.236e-49
Identity = 95/212 (44.81%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LG+TGSIGTQTLD++ +  ++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR    E+L +VK   ALKHP W+MG+KI++DSA
Sbjct:    2 KNITILGATGSIGTQTLDVIRKGNEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCVDSKIDTKVLKGMEGMIYISTLEEINTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFRGKKKEELIDVKPEHALKHPKWNMGRKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOBH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.076e-48
Identity = 95/212 (44.81%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR    E+L +VK   ALKHP W+MG+KI++DSA
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSDKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFRGKKKEELIDVKPEHALKHPKWNMGRKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOB1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.076e-48
Identity = 95/212 (44.81%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR    E+L +VK   ALKHP W+MG+KI++DSA
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSDKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFRGKKKEELIDVKPEHALKHPKWNMGRKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dxr PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.076e-48
Identity = 104/212 (49.06%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG+TGSIG QTLD++  H+DKFR+ A+  G N    A+ ++ FKP+ V V +E   + +K+   +   K  I  GE+ +IEAA  P+A  VV  +VG  GL PT+ A+E  K IALANKETL+  G  V   A K+++ +LP DSEHSAIFQ +QG     ++R+I+TASGG+FRD    +L+ V V +AL HPNWSMG KIT+DSA
Sbjct:    2 KNICLLGATGSIGEQTLDVIKAHDDKFRLTAMTFGKNAEKAAEIIETFKPKYVGVGDEHTYETLKQHSFSYTFKTGI--GEEALIEAAVIPEADIVVNALVGSVGLLPTLKAMEHKKTIALANKETLVTAGHIVKEHAQKYDVPLLPVDSEHSAIFQALQGENPKHIKRLIVTASGGSFRDRTRRELEGVTVEEALNHPNWSMGAKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SACD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxr PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.405e-48
Identity = 101/214 (47.20%), Postives = 137/214 (64.02%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            I VLGSTGSIG  TLD++A H DKF V AL A S+I LL +Q  +F PQ   +R+E+L   +K+ + ++    E+LAGEQ + + A      +V+  IVG AGL PT+AA+EAGK + LANKE+L+  G   +  A   +  +LP DSEH+AIFQC+      L +  +++I+LT SGG FRD P+  L       A  HPNWSMG+KI+VDSA
Sbjct:    4 ICVLGSTGSIGISTLDVLASHPDKFSVYALTANSSIDLLVEQCLKFSPQYAVIRDEALYLPLKQRIESLNCTTEVLAGEQALCDVASAVQVDSVMAAIVGAAGLAPTLAAVEAGKRVLLANKESLVMSGKLFMQAAKAASALVLPIDSEHNAIFQCLPQPYTSLADAGVQKILLTGSGGPFRDTPLADLSAKTPDQACAHPNWSMGRKISVDSA 217          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PHOLL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Photorhabdus luminescens subsp. laumondii GN=dxr PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.835e-48
Identity = 107/222 (48.20%), Postives = 141/222 (63.51%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRR-----IILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +++LGSTGS+G  TL +V  + DKF+V ALAAG NI ++A+Q   F+PQ  A+ +E    E+++ L     K E+  GEQ   + A   D   V++GIVG AGL PT+AAI AGK I LANKE+LI  G F +    KHN ++LP DSEH+AIFQ +     + L  G L++     IILT SGG FR  P+E+L  V    A  HPNWSMG+KI+VDSA
Sbjct:    2 KRLTILGSTGSVGKSTLTVVRNNPDKFKVTALAAGKNIQVMAEQCLEFRPQYAAMADEVSAKELRQLLIEQGCKTEVFFGEQAACDLAALNDVDQVMSGIVGVAGLLPTLAAIRAGKQILLANKESLITSGRFFMDAVAKHNAQLLPIDSEHNAIFQSLPEVIQRNLGRGDLKQYGIANIILTGSGGPFRHTPLEQLAFVTPDQACAHPNWSMGRKISVDSA 223          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOK5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=dxr PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.835e-48
Identity = 102/212 (48.11%), Postives = 136/212 (64.15%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LG TGSIGTQ LDI+ + E+ F++VA+++ S++  L D V  F P    +   +   + K+  +N     +IL G  G+      PD   V+T +VG  GL PT+ AIE+GKDIALANKETL+ GG  V  LA K+ +KI P DSEHSAIFQCI+G     + ++ LTASGG FR    E+L  V V +AL HP+W MGKK+T+DSA
Sbjct:    2 KKISILGVTGSIGTQALDILRKDEENFKLVAVSSHSSVNKLLDIVDEFNPSYAVLTERNAYLKFKDHCSNKNLDTKILFGIDGLNTIVALPDIDMVLTSVVGMVGLVPTIKAIESGKDIALANKETLVVGGELVTKLAKKNKVKIFPVDSEHSAIFQCIKGNNFQDIEKLYLTASGGPFRGRTREQLFNVTVKEALNHPSWRMGKKLTIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOK1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium kluyveri (strain NBRC 12016) GN=dxr PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.835e-48
Identity = 102/212 (48.11%), Postives = 136/212 (64.15%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LG TGSIGTQ LDI+ + E+ F++VA+++ S++  L D V  F P    +   +   + K+  +N     +IL G  G+      PD   V+T +VG  GL PT+ AIE+GKDIALANKETL+ GG  V  LA K+ +KI P DSEHSAIFQCI+G     + ++ LTASGG FR    E+L  V V +AL HP+W MGKK+T+DSA
Sbjct:    2 KKISILGVTGSIGTQALDILRKDEENFKLVAVSSHSSVNKLLDIVDEFNPSYAVLTERNAYLKFKDHCSNKNLDTKILFGIDGLNTIVALPDIDMVLTSVVGMVGLVPTIKAIESGKDIALANKETLVVGGELVTKLAKKNKVKIFPVDSEHSAIFQCIKGNNFQDIEKLYLTASGGPFRGRTREQLFNVTVKEALNHPSWRMGKKLTIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOAB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium acetobutylicum GN=dxr PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.130e-48
Identity = 97/212 (45.75%), Postives = 139/212 (65.57%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LG+TGSIGTQTLD++    + F+++A++A SN   + + +  FKP++V + ++   +++ +     + K  +  G +   E A + D+  VVT IVG  GL PT+ AI+AGKDIALANKETL+  G  V   A K+ + ILP DSEH AIFQC+QG     + +I+LTASGG FR    ++L  V + DAL HP W+MG+KIT+DSA
Sbjct:    2 KNISILGATGSIGTQTLDVIRNDSEAFKLLAVSAHSNFKKMIEIIDEFKPELVVMVDKLAYNKVLDYCCEKKLKTSVKVGYEAFNEVASYKDSNIVVTSIVGMIGLIPTLEAIKAGKDIALANKETLVVAGELVTKEAKKYGVNILPVDSEHGAIFQCLQGNKYKDINKILLTASGGPFRGKSFDELNNVTLNDALNHPKWTMGRKITIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HALOH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dxr PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.087e-48
Identity = 96/212 (45.28%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K + VLGSTGSIGTQTL++++  ED++ ++AL+A  +  L+  Q ++FKP+ + + NE    E+K  L+++    E+L+G +G+I  +   +A  V+  +VG  GLKPTVAA+++G  + LANKE+L+ GG  +    ++   ++LP DSEH+AIFQ + G  +  + R+ILTASGG F + P E+ K+V V DALKHPNW MG KIT+DSA
Sbjct:    3 KKLVVLGSTGSIGTQTLEVLSHLEDQWEILALSANKSTGLIEKQARKFKPRYLVMMNERAALELKHRLSDMSS--EVLSGMEGLITISSLEEADLVINALVGAVGLKPTVAALQSGNTLGLANKESLVIGGEIIKSYLNEEG-RVLPVDSEHNAIFQLLNGHNDKEVERLILTASGGPFLELPRERFKDVSVKDALKHPNWDMGGKITIDSA 211          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_CLOBM8.236e-4944.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBH1.076e-4844.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOB11.076e-4844.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACLD1.076e-4849.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SACD21.405e-4847.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PHOLL1.835e-4848.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOK51.835e-4848.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOK11.835e-4848.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOAB3.130e-4845.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HALOH4.087e-4845.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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