FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_STRCO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Streptomyces coelicolor GN=dxr PE=3 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 6.972e-48
Identity = 107/220 (48.64%), Postives = 143/220 (65.00%), Query Frame = 1
Query:   79 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA----NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            DGPK + VLGSTGSIGTQ +D+V  + D+FRV AL+A G  + LLA+Q  R K + VAV  E ++  ++EAL       E  PEILAG +   + A   D  TV+ GI G  GL PT+AA+EAG+ +ALANKE+LI GGP V  LA     +I+P DSEH+A+FQ +       +R++++TASGG FR    ++L  V V DAL HP W+MG  IT++SA
Sbjct:   21 DGPKDVVVLGSTGSIGTQAIDLVLRNPDRFRVTALSANGGRVALLAEQAYRLKARTVAVAREDVVPALREALTAQYGTGEPLPEILAGPEAATQLAAS-DCHTVLNGITGSIGLAPTLAALEAGRTLALANKESLIVGGPLVKALAKPG--QIIPVDSEHAALFQALAAGTRADVRKLVVTASGGPFRGRTRDELAAVTVEDALAHPTWAMGPVITINSA 237          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACSU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus subtilis GN=dxr PE=3 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.189e-47
Identity = 102/212 (48.11%), Postives = 143/212 (67.45%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG+TGSIG QTLD++  H+D+F++V+++ G NI      ++ F+P+ V+V +     ++K+   + E   +I  GE+G+IEAA   +   VV  ++G  GL PT+ AIE  K IALANKETL+  G  V   A K+++ +LP DSEHSAIFQ +QG     + R+I+TASGG+FRD   E+L+ V V DALKHPNWSMG KIT+DSA
Sbjct:    2 KNICLLGATGSIGEQTLDVLRAHQDQFQLVSMSFGRNIDKAVPMIEVFQPKFVSVGDLDTYHKLKQMSFSFE--CQIGLGEEGLIEAAVMEEVDIVVNALLGSVGLIPTLKAIEQKKTIALANKETLVTAGHIVKEHAKKYDVPLLPVDSEHSAIFQALQGEQAKNIERLIITASGGSFRDKTREELESVTVEDALKHPNWSMGAKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus amyloliquefaciens (strain FZB42) GN=dxr PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.029e-47
Identity = 99/212 (46.70%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG+TGSIG QTLD++  H+D+FR+V++  G N       ++ F+P+ +AV +     ++KEA  +   + +I  GE+G+IEAA   +   VV  ++G  GL PT+ AIE  K IALANKETL+  G  V   A ++ + +LP DSEHSAIFQ +QG     + R+++TASGG+FRD   ++L+ V +ADAL HPNWSMG KIT+DSA
Sbjct:    2 KNICLLGATGSIGEQTLDVLRMHQDQFRLVSMTFGKNAEKAIPLIRTFQPKYIAVGDMDTYQKVKEA--SFSHECQIGIGEEGLIEAAVMDEVDIVVNALLGSVGLIPTLKAIEQKKTIALANKETLVTAGHIVKGHAKRYGVPLLPVDSEHSAIFQALQGEQCKNIERLVITASGGSFRDKTRQELESVTIADALNHPNWSMGAKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SILPO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Silicibacter pomeroyi GN=dxr PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.519e-47
Identity = 96/212 (45.28%), Postives = 134/212 (63.21%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +S+ G+TGSIG  T+D++A   D + VVAL+ G+NI  LA   +R +  V        L +++ ALA      E  AG   ++EA   P A  V++ IVG AGL P +AA++ G  +ALANKETL+  G  VL  A +H  ++LP DSEHSA+FQ + G    A+ RI++TASGGAFRDWP+E+L       A +HPNW MG++IT+DSA
Sbjct:    7 RKVSIFGATGSIGQNTIDLIARDPDAYDVVALSGGANIAQLAADARRLRADVAVTAFPERLHDLRAALAG--SGVEAAAGPAALVEAGARP-ADWVMSAIVGAAGLAPGLAALKQGATLALANKETLVCAGALVLETARRHGARLLPVDSEHSAVFQALVGEDMEAVERIVITASGGAFRDWPLERLASATAEQAAQHPNWDMGQRITIDSA 215          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_DESAP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulforudis audaxviator (strain MP104C) GN=dxr PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.519e-47
Identity = 104/213 (48.83%), Postives = 135/213 (63.38%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            PK I+VLGSTGSIG Q LD+V  H +KF+VV LAAG N  LLA+Q   F P VV+V +    + ++  L       E+ AGE G+   A  P A  ++  + G  GL PTV AI++GKD+ALANKETL+  G  V  LA    ++ILP DSEHSA++QC        +  ++LTASGG FR +  E+L+ V+  DAL+HP W MG KITVDSA
Sbjct:    2 PKRIAVLGSTGSIGRQALDVVRSHPEKFKVVGLAAGRNWELLAEQAAEFAPGVVSVWSGDDAERVRVRLGG---GVEVHAGEPGLSAVATWPAADILLVAVAGTTGLVPTVEAIQSGKDVALANKETLVVAGELVTELALGRGVQILPVDSEHSAVWQC-TAYRRTEVTGVVLTASGGPFRRFSREELERVRPEDALRHPTWRMGPKITVDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_LAWIP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dxr PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.315e-46
Identity = 100/213 (46.95%), Postives = 134/213 (62.91%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ IS+LGSTGSIGT  LD++  H++ F +VAL  G N+ LLA Q  ++KP  +AV++E+  + +   L  +  KP I  G+QG ++ A  P+  TV++  VG AGL  TVAA + GK I LANKETL+  G  +  L  +    ILP DSEH+AIFQ +       ++ IILTASGG FR+   E LK V    A+ HPNW MG KI+VDSA
Sbjct:   18 PRTISILGSTGSIGTNALDVIKSHKELFHIVALGGGKNVQLLAKQAIQWKPDYLAVQDETSKEALIPLLP-INYKPSIFVGQQGYVKLASLPEVTTVLSAQVGAAGLHGTVAAAKNGKVICLANKETLVLAGKLIKNLCLQSGAVILPVDSEHNAIFQALYTRNPKTVQNIILTASGGPFRNKKYEFLKNVTPEQAINHPNWKMGTKISVDSA 229          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLONN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium novyi (strain NT) GN=dxr PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.315e-46
Identity = 96/212 (45.28%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG+TGSIGTQTLD++ +  +KF++VA +A  +   +   +++F P   A+ ++    ++K+       K  +L G  G+I+ +   +   VVT IVG  GL PT+ AI AGKDIALANKETL+ GG  V+  A ++N+KILP DSEH AIFQC+QG     +  I +TASGG FR   +E+L  +    ALKHP W+MGKKI++DS+
Sbjct:    2 KNICILGATGSIGTQTLDVIEKESNKFKLVAFSANKSYEKIITIIEKFNPVYGAINDKETFLKVKDHCNINNIKINLLYGMDGLIKISTLEEVELVVTSIVGMIGLVPTLEAINAGKDIALANKETLVTGGELVMKAAKQNNVKILPVDSEHGAIFQCLQGNSYKDIETIYVTASGGPFRQSKLEELINITPEQALKHPKWNMGKKISIDSS 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_THERP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxr PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.717e-46
Identity = 101/212 (47.64%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE--GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +S+LGSTGSIG QTL++VA H D+FRVVALAA S I  L +QV+ F+P++VA+  ESL     +          +++G  G++EAA +  A  VV  + G +G++PT+AA  AGK IALANKE+++  GP +  +  +   ++ P DSEHSA++Q +Q LP     + R+ILTASGG FRD P+E L +V   +AL HP W MG KIT+DSA
Sbjct:    5 VSLLGSTGSIGRQTLEVVAAHPDRFRVVALAARSQIDALQEQVRIFRPELVAIAQESLGISFPDT--------RVVSGPGGLVEAATYETADIVVIALSGNSGIEPTLAAAAAGKTIALANKESVVCAGPLLRDIQSRTGCQVRPVDSEHSALWQLLQ-LPHRPAEIARVILTASGGPFRDRPLEHLNQVTPDEALAHPTWRMGPKITIDSA 207          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PORGI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Porphyromonas gingivalis GN=dxr PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.717e-46
Identity = 100/212 (47.17%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGTQTLDI+  + D F V  L A +N+ LL  Q + ++P++V + N+     I+EALA++  K  +  G + + +A   PD   VVT +VG +GL PT+ AIEA K IALANKETL+  G  ++ LA  + + ILP DSEHSAIFQ + G  +    +I+LTASGG F     E+L+      AL+HPNW+MG K+T+DSA
Sbjct:    3 KNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIK--VWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIMRLAQDNQVPILPVDSEHSAIFQALLGERQRP-EKILLTASGGPFLHLTAEELQHATREQALRHPNWNMGAKVTIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PORG3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxr PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.717e-46
Identity = 100/212 (47.17%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGTQTLDI+  + D F V  L A +N+ LL  Q + ++P++V + N+     I+EALA++  K  +  G + + +A   PD   VVT +VG +GL PT+ AIEA K IALANKETL+  G  ++ LA  + + ILP DSEHSAIFQ + G  +    +I+LTASGG F     E+L+      AL+HPNW+MG K+T+DSA
Sbjct:    3 KNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIK--VWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIMRLAQDNQVPILPVDSEHSAIFQALLGERQRP-EKILLTASGGPFLHLTAEELQHATREQALRHPNWNMGAKVTIDSA 211          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_STRCO6.972e-4848.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACSU1.189e-4748.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACA22.029e-4746.701-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SILPO4.519e-4745.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESAP4.519e-4748.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LAWIP1.315e-4646.951-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLONN1.315e-4645.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THERP1.717e-4647.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PORGI1.717e-4647.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PORG31.717e-4647.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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