FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PROMH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Proteus mirabilis (strain HI4320) GN=dxr PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.929e-46
Identity = 101/222 (45.50%), Postives = 136/222 (61.26%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGT TL ++  + D+F+V+AL AG N T +A Q + F+P+   + +E    E+K+ LAN   K EIL+G   V E A   +A  V++ I G AGLKPT+AAIE GK I LANKE+LI  G        K+  K+LP DSEH+AI+Q +            L    +  I+LT SGG FR  P+++L  +    A  HPNWSMG+KI+VDSA
Sbjct:    2 KQITILGSTGSIGTSTLSVIENNPDEFQVLALVAGKNATKMAQQCRAFQPKYAVMSDEKSAGELKQLLANTSCKTEILSGSDAVNEIAALDEADQVMSAITGVAGLKPTLAAIEKGKRILLANKESLITSGRLFFDAVAKYGAKVLPIDSEHNAIYQSLPTGIQDNLGHASLEAHGITSILLTGSGGPFRYTPLDELDAMTPDQACAHPNWSMGRKISVDSA 223          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSE14 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxr PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.826e-46
Identity = 98/219 (44.75%), Postives = 136/219 (62.10%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            GP+ I++LG+TGSIG  TLD+VA H  +++V AL   S +  L     R  PQ   V ++ +  ++++ LA       +L GE G+ E A HP    V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+     +GL    +RRI+LTASGG FR+ P+E+L+ V    A  HP WSMG+KI+VDSA
Sbjct:    3 GPQHITILGATGSIGLSTLDVVARHPSRYQVFALTGFSRLDELLALCVRHTPQYAVVPDQFVARKLQDDLAAAVLDTRVLVGEGGLCEVAAHPRVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGDLFMQAVRQSGAVLLPIDSEHNAIFQCLPGDFARGLGAVGVRRIMLTASGGPFRETPLEQLQNVTPEQACAHPVWSMGRKISVDSA 221          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_LEPIN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leptospira interrogans GN=dxr PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.826e-46
Identity = 92/209 (44.02%), Postives = 132/209 (63.16%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDS 720
            + +LG++GS+G  TL ++  H +KFR+ + +  SN+    +  K F P  + V ++     +   L N   + +IL GE  + E  R P+   V+T IVG  GL+PT+AAI AGK + +ANKETL+  GP +  L  KHN K++P DSEH+A+FQ ++ L   ++ +IILTASGGAFRD PVE+L  V    AL HP W+MG KIT+DS
Sbjct:    5 VCLLGASGSVGESTLKVLRAHPEKFRLHSFSVHSNLEKAKEIQKEFSPDFICVSSDFADVGV---LGNKLGRTQILYGESSLCELVREPEVEIVITAIVGSVGLRPTIAAITAGKRLGIANKETLVTSGPLIQSLIAKHNTKVVPVDSEHNALFQLLESLNPNSVEKIILTASGGAFRDLPVEQLSSVTKEQALHHPTWNMGPKITIDS 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SILST (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Silicibacter sp. (strain TM1040) GN=dxr PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.526e-46
Identity = 94/212 (44.34%), Postives = 135/212 (63.68%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+ G+TGSIG  T+D++    D + VVAL+ G N+  LA      +  +    +++ L+E++ ALA      E  +G   ++EAA  P A  +++ IVG AGL P + A+E G  +ALANKE+L+  G  ++  A  H  +ILP DSEHSA+FQ + G     + RII+TASGGAFRDWP+E+LK   +A+A  HPNW MG++IT+DSA
Sbjct:    7 KKISIFGATGSIGQSTIDLIRRAPDAYDVVALSGGHNVAQLARDAIELQADIAITAHDARLEELRSALAG--SGVEAASGAAALVEAASRP-ADWIMSAIVGAAGLAPGLKALEQGTTLALANKESLVCAGALLMQTAADHGARILPVDSEHSAVFQALVGERIEEVERIIITASGGAFRDWPLERLKTASLAEASSHPNWDMGQRITIDSA 215          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus pumilus (strain SAFR-032) GN=dxr PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.526e-46
Identity = 98/210 (46.67%), Postives = 136/210 (64.76%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            IS+LG+TGSIG QTLD++ +H DKF++ A+  G N+      +++F+P+ V   +E     +K    + E   ++ AG++  IEAA +     VV  +VG  GL PT+ AIE  K IALANKETL+  G  V   A  +++ +LP DSEHSAIFQC+QG     + R+I+TASGG+FRD    +L+ V V +AL HPNWSMG KIT+DSA
Sbjct:    4 ISLLGATGSIGEQTLDVIRQHPDKFKLKAMTFGRNVDKAIPIIEQFQPEFVGCLSEEAYHTLKGH--SFEYDVKMAAGDEANIEAAIYDAVDVVVNALVGSVGLVPTLKAIEQKKTIALANKETLVTAGHIVKEYAKTYDVPLLPVDSEHSAIFQCLQGEQAKNIERLIVTASGGSFRDKKRTELEGVTVEEALNHPNWSMGAKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RHOPT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.523e-46
Identity = 99/214 (46.26%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            G + +SVLG+TGSIG  T+D++    +++RV AL   +N+  LA   K F  + VAV + + L E++ ALA  +      AGE  VIEAA  P A  V+  I G AGLKP +AA++ G  +ALANKE L+  G F +  A     +ILPADSEH+A+FQ +       L R+I+TASGG FR W    +++  +A ALKHPNWSMG+KIT+DSA
Sbjct:   15 GVRTVSVLGATGSIGDSTMDLIRAEPERYRVEALTGNANVAGLAKLAKEFNARFVAVADPARLGELRAALAGTDVACG--AGESAVIEAAARP-ADWVMAAISGAAGLKPALAAVDRGTTVALANKECLVCAGDFFMSRATAAGAQILPADSEHNALFQALASGNRHELTRVIITASGGPFRTWAAADIEQATLAQALKHPNWSMGQKITIDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RHOPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxr PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.523e-46
Identity = 101/214 (47.20%), Postives = 136/214 (63.55%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            G + ISVLG+TGSIG  T+D++    +K+RV +L   +N+  LA   K F  + VAV + + L E++ ALA+ E      AGE  VIEAA  P A  V+  I G AGLKP +AA++ G  +ALANKE L+  G F +  A     +ILPADSEH+A+FQ +       L R+I+TASGG FR W    +++  +A ALKHPNWSMG+KIT+DSA
Sbjct:   15 GVRTISVLGATGSIGDSTMDLLRAAPEKYRVESLTGNANVAGLAKLAKEFSAKFVAVADPARLGELRAALADTEIACG--AGESAVIEAASRP-ADWVMAAISGAAGLKPALAAVDRGATVALANKECLVCAGDFFMSRAVAAGARILPADSEHNALFQALASGNRHELTRVIITASGGPFRTWAAADIEQATLAQALKHPNWSMGQKITIDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSEF5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxr PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.523e-46
Identity = 96/215 (44.65%), Postives = 133/215 (61.86%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            I+VLG+TGSIG  TLD++A H D+++V AL   + +  L     + +P+   V   +    +++ L       ++L GEQG+ E A  P+   V+  IVG AGL+PT+AA+EAGK I LANKE L+  G   +    K    +LP DSEH+AIFQC+     +GL    +RRI+LTASGG FR  P+E+L+ V    A  HPNWSMG+KI+VDSA
Sbjct:    7 ITVLGATGSIGLSTLDVIARHPDRYQVFALTGFTRLAELLALCVKHEPRFAVVPEAAAASRLQQDLRGAGLATQVLVGEQGLCEVASAPEVDAVMAAIVGAAGLRPTLAAVEAGKKILLANKEALVMSGALFMQAVGKSGSVLLPIDSEHNAIFQCMPADFSRGLSRVGVRRILLTASGGPFRQTPLEELEHVSPEQACAHPNWSMGRKISVDSA 221          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MOOTA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=dxr PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.523e-46
Identity = 105/214 (49.07%), Postives = 136/214 (63.55%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP--EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I+VLGSTGSIG QTL++VA H  +FRV AL A  N  LLA QV+RF+P++  + +E    E    LA +   P   ILAGE+G++ AA       VV  +VG   LK  +AA+EAGKDIALANKE L+A G  V+  A + + +I+P DSEHSAIFQC++    G +  +I+TASGG  R  P  ++  V    AL HP W MG KIT+DSA
Sbjct:    3 KEITVLGSTGSIGRQTLEVVAAHPGRFRVAALVAARNDELLAAQVRRFRPRLAVLLDE----ERARVLAEMVSDPGIRILAGEEGLMAAACLEGVELVVAAMVGIRSLKAILAALEAGKDIALANKEVLVAAGQLVMDRARRLSRQIIPVDSEHSAIFQCLR--QGGRVAEVIITASGGPLRQMPRAEMANVTPEQALNHPTWVMGPKITIDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RHOP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxr PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.113e-45
Identity = 102/215 (47.44%), Postives = 135/215 (62.79%), Query Frame = 1
Query:   79 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            DG + ISVLG+TGSIG  T+D++    +K+RV AL   +N+  LA   K F  + VAV + + L E++ ALA  +      AGE  VIEAA  P A  V+  I G AGLKP +AA++ G  +ALANKE L+  G F +  A      ILPADSEH+A+FQ +       L R+I+TASGG FR W    +++  +A ALKHPNWSMG+KIT+DSA
Sbjct:   14 DGVRSISVLGATGSIGDSTMDLLRAAPEKYRVEALTGNANVAGLAKLAKEFNARFVAVADPARLGELRAALAGTDIAYG--AGESAVIEAAARP-ADWVMAAISGAAGLKPALAAVDRGATVALANKECLVCAGDFFMSRAVAAGSCILPADSEHNALFQALASGNRHELTRVIITASGGPFRTWSAADIEQATLAQALKHPNWSMGQKITIDSA 225          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_PROMH2.929e-4645.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSE143.826e-4644.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LEPIN3.826e-4644.021-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SILST6.526e-4644.341-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACP26.526e-4646.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOPT8.523e-4646.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOPS8.523e-4647.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSEF58.523e-4644.651-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MOOTA8.523e-4649.071-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOP21.113e-4547.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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