FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_LISMH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dxr PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.239e-45
Identity = 100/212 (47.17%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG+TGSIGTQTL I+ E+ +KF+VVAL+ G N+      +K FKP++VAV +      ++    NV+       G +G+ E A + D   ++  ++G  GL PT+ AIEAGK IA+ANKETL+  G  V+  A + NI +LP DSEHSAI Q + G     + +I+LTASGG+FRD   E+L  V V +ALKHPNW+MG K+T+DSA
Sbjct:    2 KKIILLGATGSIGTQTLAIIRENPEKFQVVALSFGRNMERGRAIIKEFKPKMVAVWHTRDRVTLEAEFPNVK----FFNGLEGLREVATYLDGDVLLNAVMGSVGLLPTLDAIEAGKAIAIANKETLVTAGHLVMRAAKEKNISLLPVDSEHSAILQALNGENTERIEKIVLTASGGSFRDKTREQLSLVTVKEALKHPNWNMGNKLTIDSA 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_LISIN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Listeria innocua GN=dxr PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.239e-45
Identity = 100/214 (46.73%), Postives = 139/214 (64.95%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI--LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG+TGSIGTQTL I+ E+ +KF++VA + G NI      ++ FKP++VAV +       ++ +    E P++    G  G+ E A + D   ++  ++G  GL PT+ AIEAGK IA+ANKETL+  G  V+  A + NI +LP DSEHSAI Q + G     + +IILTASGG+FRD   E+L EV V +ALKHPNW+MG K+T+DSA
Sbjct:    2 KKIILLGATGSIGTQTLTIIRENPEKFQLVAFSFGRNIERGRAIIQEFKPKMVAVWHT------RDRVTLESEFPDVKFFNGLDGLREVATYLDGDVLLNAVMGSVGLLPTLDAIEAGKAIAIANKETLVTAGHLVMQAAKEKNISLLPVDSEHSAILQALNGENRERIEKIILTASGGSFRDKTREQLSEVTVKEALKHPNWNMGNKLTIDSA 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RHOPB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxr PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.230e-45
Identity = 95/214 (44.39%), Postives = 136/214 (63.55%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            G + +SVLG+TGSIG  T+D++    ++++V AL A +N+  LA   + F  + VAV + + L E++ ALA         AG+  ++EAA  P A  V+  + G AGLKPT+AA++ G  +ALANKE L+  G F +  A K    ILPADSEH+A+FQ +       L ++I+TASGG FR W    +++  +A ALKHPNWSMG+KIT+DSA
Sbjct:   15 GVRSVSVLGATGSIGDSTMDLLRASPERYQVEALTANTNVAGLAKLAREFNARFVAVADPARLSELRAALAGTGIACG--AGDSAIVEAAERP-ADWVMAAVAGAAGLKPTLAAVDRGAHVALANKECLVCAGEFFMDRAAKAGATILPADSEHNALFQALASGNRDELTKVIITASGGPFRTWAAADIEQATLAQALKHPNWSMGQKITIDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RALPJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ralstonia pickettii (strain 12J) GN=dxr PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.230e-45
Identity = 95/213 (44.60%), Postives = 133/213 (62.44%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-QGLPE--GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            ++VLG+TGSIG  TLD+V  H DK+ V AL A +    LA   + F+P++  + + +  D +++ L       EI +G + + EAA HPD   V+  IVG AGL+PT+AA+ AGK + LANKE L+  G   +    +H   +LP DSEH+AIFQC+ Q +P+    + RI+LTASGG FR   V+ L +V    A  HPNW MG+KI+VDSA
Sbjct:    4 LTVLGATGSIGDSTLDVVRRHPDKYSVFALTANAQADKLAVLCREFRPKMAVLGSAAAADALRDQLGTEAAGIEICSGTKALEEAAAHPDCDAVMAAIVGAAGLRPTLAAVRAGKRVLLANKEALVMSGALFMDAVREHGATVLPIDSEHNAIFQCLPQQVPQFGRGVSRIVLTASGGPFRTRAVDSLADVTPDQACAHPNWVMGRKISVDSA 216          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSEPG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas putida (strain GB-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.524e-45
Identity = 96/218 (44.04%), Postives = 133/218 (61.01%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ I+VLG+TGSIG  TLD++A H D+++  AL+  S +  L     R +P    V +      ++ +LA      E+L GE G+ + A   +   V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+     +GL    +RRI+LTASGG FR+ PVE L +V    A  HPNWSMG+KI+VDSA
Sbjct:    4 PQRITVLGATGSIGLSTLDVIARHPDRYQAFALSGYSRVDELLALCVRHRPAFAVVPSAEAAARLRASLAAAGCATEVLEGEAGLCQVASAAEVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGALFMEAVRRSGAVLLPIDSEHNAIFQCMPGDYARGLSAVGVRRILLTASGGPFRETPVEALLDVTPEQACAHPNWSMGRKISVDSA 221          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BRASB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxr PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.524e-45
Identity = 98/212 (46.23%), Postives = 136/212 (64.15%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + I+VLG+TGSIG  T+D++    +++RV AL   SN+  LA   + FKP  VAV + + L+E+++ALA         AGE  +IEAA  P A  V+  + G AGLKP +AA++ G  +ALANKE L+  G F +  A +    ILPADSEH+A+FQ +       L R+I+TASGG FR W    +++  +A ALKHPNWSMG+KIT+DSA
Sbjct:   17 RSITVLGATGSIGESTMDLLRGAPERYRVEALTGNSNVQGLAKLAREFKPGFVAVADPARLNELRDALAGTGIACG--AGESAIIEAAARP-ADWVMAAVSGAAGLKPALAAVDRGATVALANKECLVCAGDFFMQRAAQAGACILPADSEHNALFQALSSGNREELVRVIITASGGPFRTWAAADIEQATLAQALKHPNWSMGQKITIDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BRAJA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bradyrhizobium japonicum GN=dxr PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.524e-45
Identity = 98/212 (46.23%), Postives = 132/212 (62.26%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + ++VLG+TGSIG  T+D++    +++RV AL A  N+  LA   K F  + VA+ + S   E+K ALA      E  AGE  VIEA   P A  V+  + G AGLKP +AA++ G  +ALANKE L+  G F +  A K    ILPADSEH+A+FQ +       L R+I+TASGG FR W    +++  +A ALKHPNWSMG+KIT+DSA
Sbjct:   17 RSVTVLGATGSIGDSTMDLLRASPERYRVEALTANGNVEALAKLAKEFSARFVAIADTSKFAELKAALAGTST--ECGAGESAVIEAGARP-ADWVMAAVSGAAGLKPALAAVDRGAHVALANKECLVCAGDFFMQRAAKAGACILPADSEHNALFQALGSGNRDELVRVIITASGGPFRTWKPADIEQATLAQALKHPNWSMGQKITIDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSESM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas syringae pv. tomato GN=dxr PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.215e-45
Identity = 97/219 (44.29%), Postives = 134/219 (61.19%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            GP+ I++LG+TGSIG  TLD+VA H   ++V AL   S +  L     +  PQ   V  +    ++++ LA       +L GE G+ E A HP    V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+     +GL    +RRI+LTASGG FR+ P+E+L++V    A  HP WSMG+KI+VDSA
Sbjct:    3 GPQHITILGATGSIGLSTLDVVARHPTLYQVFALTGFSRLDELLALCIKHTPQYAVVPEQVAARKLQDDLAAAGLDTRVLVGEGGLCEVAAHPMVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGALFMQAVRQSGAVLLPIDSEHNAIFQCLPGDFARGLGAVGVRRIMLTASGGPFRETPLEQLQDVTPEQACAHPVWSMGRKISVDSA 221          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ZYMMO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Zymomonas mobilis GN=dxr PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 9.423e-45
Identity = 95/213 (44.60%), Postives = 136/213 (63.85%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ ++VLG+TGSIG  TLD++  + D+++V+AL A  N+  LAD  KR   +   + + SL +++KEALA      E  AG   ++EAA    A   +  I+GCAGLK T+AAI  GK +ALANKE+L++ G  ++    +H   +LP DSEH+AIFQC        +RRII+TASGG FR   + ++  V    A++HPNWSMG KI++DSA
Sbjct:    4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAG--SSVEAAAGADALVEAAMM-GADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSEU2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dxr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.423e-45
Identity = 98/219 (44.75%), Postives = 134/219 (61.19%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            GP+ IS+LG+TGSIG  TLD+VA H   ++V AL   S +  L     R  PQ   V ++ +  ++++ LA       +L GE G+ E A  P    V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    ++   +LP DSEH+AIFQC+     +GL    +RRI+LTASGG FR+ P+E+L  V    A  HP WSMG+KI+VDSA
Sbjct:    3 GPQQISILGATGSIGLSTLDVVARHPALYQVFALTGFSRLDELLALCIRHTPQYAVVPDQVVARKLQDDLAAAGLDTRVLVGEGGLCEVAADPRVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGALFMQAVRQNGAVLLPIDSEHNAIFQCLPGDFARGLGAVGVRRIMLTASGGPFRETPLEQLHNVTPEQACAHPVWSMGRKISVDSA 221          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_LISMH3.239e-4547.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LISIN3.239e-4546.731-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOPB4.230e-4544.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RALPJ4.230e-4544.601-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSEPG5.524e-4544.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BRASB5.524e-4546.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BRAJA5.524e-4546.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSESM7.215e-4544.291-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ZYMMO9.423e-4544.601-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSEU29.423e-4544.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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