FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSEPK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas putida (strain KT2440) GN=dxr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.423e-45
Identity = 97/218 (44.50%), Postives = 132/218 (60.55%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ I+VLG+TGSIG  TLD++A H D+++  AL   S I  L     R +P    V +      ++ +LA      E+L GE G+ + A   +   V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+     +GL    +RRI+LTASGG FR+ PVE L +V    A  HPNWSMG+KI+VDSA
Sbjct:    8 PQRITVLGATGSIGLSTLDVIARHPDRYQAFALTGYSRIDELLALCVRHRPAFAVVPSTEAAVRLRASLAAAGCTTEVLEGEAGLCQVASAAEVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGALFMEAVRQKGAVLLPIDSEHNAIFQCMPGDYARGLSAVGVRRILLTASGGPFRETPVEALLDVTPEQACAHPNWSMGRKISVDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_LISW6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dxr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.423e-45
Identity = 97/212 (45.75%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG+TGSIGTQTL I+ E+ +KF++VAL+ G N+      ++ FKP++VAV +      ++    NV+       G +G+ E A + D   ++  ++G  GL PT+ AIEAGK IA+ANKETL+  G  V+  A + NI +LP DSEHSAI Q + G     + +++LTASGG+FRD    +L EV V +ALKHPNW+MG K+T+DSA
Sbjct:    2 KKIILLGATGSIGTQTLAIIRENPEKFQLVALSFGRNMERGRAIIQEFKPKMVAVWHTRDRITLESEFPNVK----FFNGLEGLREVATYLDGDVLLNAVMGSVGLLPTLDAIEAGKSIAIANKETLVTAGHIVMRAAREKNISLLPVDSEHSAILQALNGENPERIEKLVLTASGGSFRDKTRGELSEVTVKEALKHPNWNMGNKLTIDSA 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_DESOH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=dxr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.423e-45
Identity = 98/212 (46.23%), Postives = 134/212 (63.21%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +++LGSTGSIG  TL +V+   D+F V AL A  ++  LA+QV+RF P +  V +      +KE L     + E+L GE G   A   P    VV+ +VG AGL PT+AAI+AGK +ALANKE L+  G  V+ LA +  + +LP DSEHSAIFQC+QG  +  L +I LTASGG F +   ++++      AL HP W+MGKKI++DSA
Sbjct:    2 KRLTLLGSTGSIGVNTLKVVSRFCDRFSVEALCARGSVDTLAEQVQRFSPSLAVVIDAPTAQALKERLP-AGSRTEVLFGEAGYCHAVSLPGVDMVVSAMVGAAGLGPTIAAIKAGKAVALANKEVLVMAGETVMALAAQKGVPLLPIDSEHSAIFQCLQGNDKTFLSKIHLTASGGPFLNKTRQEIETATPEQALAHPTWTMGKKISIDSA 212          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOTE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium tetani GN=dxr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.423e-45
Identity = 92/212 (43.40%), Postives = 136/212 (64.15%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG+TGSIGTQTL+++ E ++  ++ A +A  +   +   ++ F+P+ V++ ++    ++KE      +  E+L G +G+   A       V+T +VG  GL+PT+ AI   KDIALANKETL+  G  +   AH++ + ILP DSEH AIFQC+ G  +G + +I LTASGG FR    E+L+ V V  ALKHPNW+MGKKI++DSA
Sbjct:    2 KNICILGATGSIGTQTLEVIREEKENLKLYAASANKSSEKIISIIEEFEPKYVSMTDKEAFLKVKEFCMKNNKNTEVLYGIEGMNTIASLDKVDIVLTSVVGMIGLEPTLKAIRNKKDIALANKETLVVAGEIIKKEAHENKVNILPVDSEHGAIFQCLLGNLKGDINKIHLTASGGPFRGKKREELENVTVEQALKHPNWNMGKKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SOLUE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Solibacter usitatus (strain Ellin6076) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.231e-44
Identity = 93/216 (43.06%), Postives = 132/216 (61.11%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I+VLGSTGSIGT TLD+V  +   + V +L AG NI LL  Q+  F+P++  V + ++LD +  +L        E P++L+G+   + A R P+  TV++ IVG AGL+ T  A+  GK + LANKE L++GG  V+    K   ++LP DSEH+   QC++      + R+ILTASGG FR+ PV +L  V    AL HP W MG +IT+D A
Sbjct:    2 KTIAVLGSTGSIGTNTLDVVRRNRHLYEVYSLVAGQNIELLTGQILEFRPKLAVVASAAVLDLLTASLQAAGLPKSEWPDLLSGDAARVAAVRAPEVDTVISAIVGVAGLEATYEAVCLGKRVGLANKEVLVSGGSLVMEAVRKFGAELLPVDSEHNGAHQCLRAGNRAQVSRLILTASGGPFRNTPVSELPFVTPGQALNHPTWKMGNRITIDCA 217          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSEP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.231e-44
Identity = 97/218 (44.50%), Postives = 131/218 (60.09%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ I+VLG+TGSIG  TLD++A H D+++  AL   S I  L     R +P    V +      ++  LA      E+L GE G+ + A   +   V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+     +GL    +RRI+LTASGG FR+ PVE L +V    A  HPNWSMG+KI+VDSA
Sbjct:    8 PQRITVLGATGSIGLSTLDVIARHPDRYQAFALTGYSRIDELLALCVRHRPAFAVVPSTEAAVRLRAGLAAAGCTTEVLEGEAGLCQVASAAEVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGALFMEAVRQKGAVLLPIDSEHNAIFQCMPGDYARGLSAVGVRRILLTASGGPFRETPVEALLDVTPEQACAHPNWSMGRKISVDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RALSO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ralstonia solanacearum GN=dxr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.607e-44
Identity = 97/213 (45.54%), Postives = 131/213 (61.50%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-QGLPE--GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            I+VLG+TGSIG  TLD+V  H D++RV AL A + +  LA   + F+P +  V + +  + +++ L       +I  G + + EAA HPD   V+  IVG AGL+PT+AA+ AGK + LANKE L+  G   +    +H   +LP DSEH+AIFQC+ Q  P     + RI+LTASGG FR   VE L EV    A  HPNW MG+KI+VDSA
Sbjct:    4 ITVLGATGSIGDSTLDVVRRHPDRYRVFALTANTQVDKLAALCRVFRPAMAVVGSATAAEVLRDQLGAEATGIDIRFGPEALEEAAAHPDCDAVMAAIVGAAGLRPTLAAVRAGKRVLLANKEALVMSGALFMDAVRQHGATVLPIDSEHNAIFQCLPQQRPSFGHGVARIVLTASGGPFRTRAVETLAEVTPDQACAHPNWVMGRKISVDSA 216          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_NITHX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.607e-44
Identity = 97/214 (45.33%), Postives = 133/214 (62.15%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            G + ++VLG+TGSIG  T+D++     ++RV AL A SN+  L    + F  + VAV + +   E+K+ALA      E   GE  +IEAA  P A  ++  + G AGLKP +AA++ G  IALANKE L+  G F +  A K    ILPADSEH+A+FQ +       L R+I+TASGG FR W    +++  +A ALKHPNWSMG+KIT+DSA
Sbjct:   15 GVRTVTVLGATGSIGDSTMDLLRGAPGRYRVEALTANSNVEALVKLAREFAARFVAVADPARFGELKDALAG--SGIECGVGESAIIEAASRP-ADWLMAAVSGAAGLKPALAAVDRGTTIALANKECLVCAGDFFMQRAAKAGACILPADSEHNALFQALSSGNRDELTRVIITASGGPFRTWAAADIEKATLAQALKHPNWSMGRKITIDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_DESDG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfovibrio desulfuricans (strain G20) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.607e-44
Identity = 100/213 (46.95%), Postives = 130/213 (61.03%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ + +LGSTGSIGT  L +V    + FR+ ALA   N+ LLA Q   ++P  +AV N +  DE+   L     +P I  G++G    A  P+A  V++  VG AGL+ TVAA  AGK IALANKE+L+  G  +  L H+    +LP DSEH+AIFQ +QG     +RRIILTASGG FR      L+ V    AL HPNWSMG KI++DSA
Sbjct:   18 PRSLVLLGSTGSIGTSALRVVERQPELFRITALAGARNVRLLARQAAAYRPPHLAVINGNAADELASLLP-AGYRPRIHTGQEGYEFLAALPEADCVLSAQVGAAGLRATVAAARAGKTIALANKESLVLAGGLIRRLCHETGASVLPVDSEHNAIFQALQGHDAAQMRRIILTASGGPFRGRDRTFLQSVTREQALNHPNWSMGAKISIDSA 229          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RHOCS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.099e-44
Identity = 96/225 (42.67%), Postives = 137/225 (60.89%), Query Frame = 1
Query:   49 AVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +VT       DG + ++VLGSTGS+G+ T++++  + +++R VAL A  N+  LA Q +R +P+V  V +E+   ++K+ALA         AG   V+EAA+ P A  V+  IVG AGL+PT+AA   G  +A ANKE L+  G  ++    +H   +LP DSEHSAIFQ        A+ R+ILTASGG FR W  E++      +A  HPNW+MG KI+VDSA
Sbjct:    4 SVTPRHSTGGDGIRSVTVLGSTGSVGSNTVELIEAYPERYRTVALVARRNVAALAGQARRLRPEVAVVADEAHYADLKDALAGTGIAAA--AGPAAVVEAAQRP-ADWVMAAIVGAAGLEPTLAAARRGAIVAFANKECLVCAGELLMAEVRRHGATLLPVDSEHSAIFQVFDPERRPAVSRLILTASGGPFRTWTRERMAAATPKEACAHPNWTMGAKISVDSA 225          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_PSEPK9.423e-4544.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LISW69.423e-4545.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESOH9.423e-4546.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOTE9.423e-4543.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SOLUE1.231e-4443.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSEP11.231e-4444.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RALSO1.607e-4445.541-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NITHX1.607e-4445.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESDG1.607e-4446.951-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOCS2.099e-4442.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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