FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSEPF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.099e-44
Identity = 94/218 (43.12%), Postives = 132/218 (60.55%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ I+VLG+TGSIG  TLD++A H D+++  AL+  + ++ L     R  P+   V        +++ L       ++L GE+G+ + A  P+   V+  IVG AGL+PT+AA+EAGK I LANKE L+  G   +    K    +LP DSEH+AIFQC+     +GL    +RRI+LTASGG FR  P+ +L  V    A  HPNWSMG+KI+VDSA
Sbjct:    4 PQQITVLGATGSIGLSTLDVIARHPDRYQAFALSGFTRLSELFALCVRHLPEYAVVPEAGAARNLQDDLRAAGLSTQVLVGEEGLCQVAAAPEVDAVMAAIVGAAGLRPTLAAVEAGKKILLANKEALVMSGALFMQAVRKSGSVLLPIDSEHNAIFQCMPQDFARGLSNVGVRRILLTASGGPFRQTPMAELAHVSPDQACAHPNWSMGRKISVDSA 221          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_NITWN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.099e-44
Identity = 96/214 (44.86%), Postives = 132/214 (61.68%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            G + ++VLG+TGSIG  T+D++     ++RV AL A SN+  L    + F  + VA+ + S  DE+K ALA      E   GE  +IEAA  P A  ++  + G AGLKP +AA++ G  IALANKE L+  G F +  A +    +LPADSEH+A+FQ +       L R+I+TASGG FR W    ++   +A ALKHPNWSMG+KIT+DSA
Sbjct:   15 GVRTVTVLGATGSIGDSTMDLLRGARGRYRVEALTANSNVEGLVKLAREFDARFVALADTSYFDELKNALAGTGI--EYGVGESAIIEAASRP-ADWLMAAVSGAAGLKPALAAVDRGATIALANKECLVCAGDFFMQRAARAGACVLPADSEHNALFQALSSGNRDELTRVIITASGGPFRTWAAADIENATLAQALKHPNWSMGRKITIDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSEPW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas putida (strain W619) GN=dxr PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.581e-44
Identity = 96/215 (44.65%), Postives = 130/215 (60.47%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            I+VLG+TGSIG  TLD++A H ++++V AL+  + I  L        P    V N      ++E LA      E+L GE G+ E A  P+   V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+     +GL +  +RRI+LTASGG FR+ P   L +V    A  HPNWSMG+KI+VDSA
Sbjct:    7 ITVLGATGSIGLSTLDVIARHPERYQVYALSGYTRIDQLLALCVLHCPAYAVVPNGEAAVRLREGLAAAGCATEVLEGEAGLCEVAAAPEVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGALFMEAVRRSGAVLLPIDSEHNAIFQCLPGDYDRGLSQVGVRRILLTASGGPFRETPQADLADVTPEQACAHPNWSMGRKISVDSA 221          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CHRVO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chromobacterium violaceum GN=dxr PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.581e-44
Identity = 97/218 (44.50%), Postives = 133/218 (61.01%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----QGLPEGA-LRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ I+VLG+TGS+G  TLD+VA H +++RVVAL A   +  L +Q +RF P  + V +      ++  LA    + E+L G   +++ A  P+   V+  IVG AGL   +AA  AGK I LANKE+L+  G   +         +LP DSEHSAIFQ +     G P+GA +R+IILTASGG FR+ P   L  V   +A +HPNWSMG+KI+VDSA
Sbjct:    4 PQGIAVLGATGSVGCNTLDVVARHPERYRVVALTAHRQLDKLFEQARRFCPDYLVVADADAAARLRARLAEAGLRSEVLHGADALVQVAALPEVDAVMASIVGAAGLPSALAAARAGKRILLANKESLVVAGRLFMDAVRASGSALLPVDSEHSAIFQSLPADYAGNPDGAGVRKIILTASGGPFRNRPAADLAHVTPDEACRHPNWSMGRKISVDSA 221          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ACTPJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dxr PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.581e-44
Identity = 92/222 (41.44%), Postives = 138/222 (62.16%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K + +LGSTGSIG  TL +V +++ ++ V  L  G N+ L+A Q   F+P+  A+ +E+    ++E L  +  K E+L+G++ + E + HP+   V+  IVG AGL PT++A++AGK + LANKE+L+  G   +  A K   ++LP DSEH+AIFQ +            L E  + +IILT SGG FR  P+++   +  A A+ HPNWSMGKKI+VDSA
Sbjct:    2 KKLVILGSTGSIGKSTLSVVEQNKTEYEVFGLVGGKNVELMAAQCLLFQPKFAALDDENAAKALEEQLRQLNVKTEVLSGQKAICELSAHPEVDMVMAAIVGAAGLLPTLSAVKAGKKVLLANKESLVTCGQIFIDEARKSGAQLLPVDSEHNAIFQSLPPEAQQKVGFCPLAELGVSKIILTGSGGPFRVKPLDEFAAITPAQAVAHPNWSMGKKISVDSA 223          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ACTP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dxr PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.581e-44
Identity = 92/222 (41.44%), Postives = 138/222 (62.16%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K + +LGSTGSIG  TL +V +++ ++ V  L  G N+ L+A Q   F+P+  A+ +E+    ++E L  +  K E+L+G++ + E + HP+   V+  IVG AGL PT++A++AGK + LANKE+L+  G   +  A K   ++LP DSEH+AIFQ +            L E  + +IILT SGG FR  P+++   +  A A+ HPNWSMGKKI+VDSA
Sbjct:    2 KKLVILGSTGSIGKSTLSVVEQNKTEYEVFGLVGGKNVELMAAQCLLFQPKFAALDDENAAKALEEQLRQLNVKTEVLSGQKAICELSAHPEVDMVMAAIVGAAGLLPTLSAVKAGKKVLLANKESLVTCGQIFIDEARKSGAQLLPVDSEHNAIFQSLPPDAQQKVGFCPLAELGVSKIILTGSGGPFRVKPLDEFAAITPAQAVAHPNWSMGKKISVDSA 223          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ACIBC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter baumannii (strain ACICU) GN=dxr PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.581e-44
Identity = 97/221 (43.89%), Postives = 142/221 (64.25%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA--NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI---------QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +LG TGSIG  TL I+ +H DK+ V A++A S I+ L +  K+F+P+VV V  + ++ E+K   A  N+ +  ++LAG++G+++ A H D   V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A  H   +LP DSEH+AIFQ +          G P+  + +I+LTASGG F +  +E+L  V    A KHPNWSMG+KI+VDSA
Sbjct:    5 VCILGVTGSIGRSTLKILGQHPDKYSVFAVSAHSRISELVEICKQFRPKVVVVPEQKIV-ELKTLFAQQNISDI-DVLAGQEGLVDIASHTDVDIVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGEIMMQAARDHQALLLPVDSEHNAIFQSLPHNYLQADRTGQPQLGVSKILLTASGGPFLNHSLEQLTHVTPQQACKHPNWSMGQKISVDSA 223          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ACIAD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter sp. (strain ADP1) GN=dxr PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.581e-44
Identity = 97/220 (44.09%), Postives = 138/220 (62.73%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP-EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI---------QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +LG TGSIG  TL ++A+H DK+ + A+ A S I  L +  K+FKP+ V V +E + D++++ L        +IL+G  G++  A+      V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A  H   +LP DSEH+AIFQ +          G P+  + RI+LTASGG F D+P+E+L EV    A KHPNWSMG+KI+VDSA
Sbjct:    5 VCILGVTGSIGQSTLKVLAQHPDKYSIYAITAHSRIQELVEICKQFKPKRVVVPDEHI-DQLRQLLLQAGLADIDILSGTTGLVSVAQDEAVDVVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGNIMMQAARDHQALLLPVDSEHNAIFQSLPSNYLTLENTGQPQLGVSRILLTASGGPFLDYPLEQLSEVTPQQACKHPNWSMGQKISVDSA 223          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOBA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dxr PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.676e-44
Identity = 91/212 (42.92%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +S+LG TGSIGTQ LD++     + +++ + A S++  +   ++ F P+ V + +++   EIKE      +   +L+  +G+ + A   +   V+T +VG  GL+PT+ AI+A KDIALANKETL+  G  V+  A K+N+KILP DSEHSAI+Q ++G     L +IILTASGG FR   +  L ++ V DAL HP W+MG+KI++DSA
Sbjct:    2 KKLSILGVTGSIGTQALDVIKNSNGELKLIGVTANSSVEKMIKIIEEFDPKYVGMMDKTCAGEIKEYCDKNNKSTIVLSEMKGLNKIASLEEIDIVLTSLVGMIGLEPTLEAIKAKKDIALANKETLVVAGELVMSEAKKNNVKILPVDSEHSAIYQSLRGNDLKTLNKIILTASGGPFRGKKICDLNDISVDDALNHPKWNMGRKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ACIBT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dxr PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.108e-44
Identity = 97/221 (43.89%), Postives = 141/221 (63.80%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA--NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI---------QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +LG TGSIG  TL I+ +H DK+ V A++A S I+ L +  K+F+P+VV V  + +  E+K   A  N+ +  ++LAG++G+++ A H D   V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A  H   +LP DSEH+AIFQ +          G P+  + +I+LTASGG F +  +E+L  V    A KHPNWSMG+KI+VDSA
Sbjct:    5 VCILGVTGSIGRSTLKILGQHPDKYSVFAVSAHSRISELVEICKQFRPKVVVVPEQKIA-ELKTLFAQQNISDI-DVLAGQEGLVDIASHTDVDIVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGEIMMQAARDHQALLLPVDSEHNAIFQSLPHNYLQADRTGQPQLGVSKILLTASGGPFLNHSLEQLTHVTPQQACKHPNWSMGQKISVDSA 223          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_PSEPF2.099e-4443.121-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NITWN2.099e-4444.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSEPW3.581e-4444.651-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHRVO3.581e-4444.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACTPJ3.581e-4441.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACTP23.581e-4441.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACIBC3.581e-4443.891-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACIAD3.581e-4444.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBA4.676e-4442.921-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACIBT6.108e-4443.891-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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