FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:326..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.385e-64
Identity = 133/230 (57.83%), Postives = 162/230 (70.43%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL AG N+ LL +Q++R +P++VA+ +E+LL E+K+ L  ++        PE++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q            G+P   LRRI LTASGGAFRDW    L++  VADA  HPNWSMG+KITVDSA
Sbjct:    2 KAISVLGSTGSIGTQTLQIVDDFPDQFRVVALTAGRNLALLVEQIQRHQPELVALADEALLPELKQRLEALDPSDRPAQCPEMVGGPDGLEVAASWGSAELVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWADTARLSTGVPTPGLRRIQLTASGGAFRDWNAADLEKATVADATSHPNWSMGRKITVDSA 231          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SYNSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9605) GN=dxr PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.940e-64
Identity = 133/228 (58.33%), Postives = 159/228 (69.74%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K ISVLGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL +QV+R +P+VVA+ +  LL E++E L +      + P+++ G  G+  AA    A  VVTGIVGCAGL PT+AAI AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q            G+P   LRRI LTASGGAFRDW    L++  VADA  HPNWSMG+KITVDSA
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFRVVALTAGRNLKLLVEQVQRHRPEVVALADSDLLPELQERLKDAGVTGADAPQLVGGADGLNVAAAWDSADLVVTGIVGCAGLLPTLAAIRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWAENARLSTGVPTPGLRRIQLTASGGAFRDWTAADLEKATVADATSHPNWSMGRKITVDSA 229          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PROMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxr PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.940e-64
Identity = 129/222 (58.11%), Postives = 159/222 (71.62%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE------------GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LGSTGSIGTQTL+IV+E  DKF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+AGK+IALANKETLIA G  V+P   +   ++LPADSEHSAIFQCIQGLP               L+ I LTASGGAFRDW VE LK V V DA  HPNWSMG+KITVDSA
Sbjct:    1 MLGSTGSIGTQTLEIVSELPDKFKVVALSAGRNIDLLTEQVSQHKPEVIAIEDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKAGKNIALANKETLIAAGSVVIPALKESKSRLLPADSEHSAIFQCIQGLPNYENADFSTGQIPNGLKAIHLTASGGAFRDWEVEDLKNVTVEDATSHPNWSMGRKITVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SYNS3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=dxr PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.184e-63
Identity = 133/230 (57.83%), Postives = 161/230 (70.00%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV------EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL+AG N++LL  Q++R +P VVA+ +++LL E+K+ L  +      E  P ++ G +G+   A    A  VVTGIVGCAGL PT+AAI AGKD+A+ANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q            G+P   LRRI LTASGGAFRDW    L++  VADA  HPNWSMGKKITVDSA
Sbjct:    2 KAISVLGSTGSIGTQTLAIVEDFPDQFRVVALSAGRNLSLLVSQIQRHRPDVVALADQALLAELKDRLMALPADTRPEPLPHLVGGPEGLDVVASWDSADLVVTGIVGCAGLLPTLAAIRAGKDLAVANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWSDTARLSTGVPTPGLRRIQLTASGGAFRDWSAADLEKATVADATSHPNWSMGKKITVDSA 231          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PROM5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxr PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.546e-63
Identity = 130/226 (57.52%), Postives = 161/226 (71.24%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE------------GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I+VLGSTGSIGTQTL+IV E  +KF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+A K+IALANKETLIA G  V+P   ++  ++LPADSEHSAIFQCIQGLP               L+ I LTASGGAFRDW VE LK V V DA  HPNWSMG+KITVDSA
Sbjct:    2 KYITVLGSTGSIGTQTLEIVRELPNKFKVVALSAGRNIDLLTEQVSQHKPEVIAIDDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKASKNIALANKETLIAAGSVVIPALKENKSRLLPADSEHSAIFQCIQGLPNYENADFVTGQIPNGLKAIHLTASGGAFRDWAVEDLKNVTVEDATSHPNWSMGRKITVDSA 227          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 128/223 (57.40%), Postives = 156/223 (69.96%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE---ALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL  Q++R +P++VA+ N  LL E+++   AL    ++P+++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+Q            G+P   LRRI LTASGGAFRDW  E L+   VADA  HPNWSMG+KITVDSA
Sbjct:    1 MLGSTGSIGTQTLQIAEEFPEQFRVVALTAGQNLDLLVQQIQRHQPELVALANADLLPELQQRLDALGTDRKRPQLVGGPDGLNIAASWESADLVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWAENARLSTGVPTPGLRRIQLTASGGAFRDWKAEDLENATVADATSHPNWSMGRKITVDSA 223          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PROM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL1A) GN=dxr PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 129/230 (56.09%), Postives = 158/230 (68.70%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K ISVLGSTGSIGTQTL I  E  D+F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+Q            G+P    + I LTASGGAFRDW  E L +  V DA  HPNWSMGKKITVDSA
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPDQFKIVALTAGKNLDLVTKQIETHQPEVVSLADESLLPELTRRINSLNEDSKILKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQGTPWADNARLSTGVPTPGFKSIQLTASGGAFRDWKAEDLVKATVEDATSHPNWSMGKKITVDSA 231          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PROMT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL2A) GN=dxr PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.973e-62
Identity = 128/230 (55.65%), Postives = 158/230 (68.70%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K ISVLGSTGSIGTQTL I  E  ++F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+Q            G+P    + I LTASGGAFRDW  E L +  V DA  HPNWSMGKKITVDSA
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFKIVALTAGKNLDLVIKQIETHQPEVVSLADESLLSELSSRINSLTENKKIVKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQGTPWADNARLSTGMPTPGFKSIQLTASGGAFRDWKAEDLVKATVEDATSHPNWSMGKKITVDSA 231          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_GEOUR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter uraniireducens (strain Rf4) GN=dxr PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 121/212 (57.08%), Postives = 153/212 (72.17%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +++LGSTGSIG  TLDIVA H DKF+VVAL AG N+ LL  Q++ F PQ+VAV NE L  ++++ L+   + P IL G +G+I AA   DA  VV  IVG AGL PT AAI+AGKDIALANKETL+  G  ++ +   H +K+ P DSEHSA+FQ +QG     +++IILTASGG F  WP EKL +V V+DAL HPNWSMG+KIT+DSA
Sbjct:    2 KKLAILGSTGSIGVSTLDIVAAHPDKFQVVALTAGGNLDLLKKQIEEFSPQLVAVLNEELAQKLQQMLSG--KGPAILHGVEGMIAAATAADADMVVAAIVGAAGLVPTAAAIKAGKDIALANKETLVTAGRLIMDMVKAHGVKLYPVDSEHSAVFQSLQGHRMEDVKQIILTASGGPFFTWPAEKLAQVTVSDALNHPNWSMGQKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.468e-61
Identity = 125/226 (55.31%), Postives = 161/226 (71.24%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LGSTGSIGTQTL+I  E  ++FRVVAL AG+N++L+ +Q++R  P+VVA+ + SLL E+K+ L  +  +      P++LAG +G+  AA    A  VV+GIVGCAGL PT+AAI+AGKD+ALANKETLIA  P VLP   +   ++LPADSEHSAIFQC+Q            G+P   LR I LTASGGAFRDW  + L++  +ADA  HPNWSMG+KITVDSA
Sbjct:    1 MLGSTGSIGTQTLEIAEEFPERFRVVALTAGTNVSLVVEQIQRHHPEVVALADASLLPELKQQLNALPSEQQPPHLPQLLAGPEGLNVAASWDSADLVVSGIVGCAGLLPTLAAIKAGKDLALANKETLIAAAPVVLPELKRSGSRLLPADSEHSAIFQCLQGTPWAENARLSTGVPTPGLRHIQLTASGGAFRDWSAKDLEKATIADATSHPNWSMGRKITVDSA 226          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_SYNS92.385e-6457.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNSC6.940e-6458.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMP6.940e-6458.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS31.184e-6357.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM51.546e-6357.521-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX1.309e-6257.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM12.232e-6256.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMT4.973e-6255.651-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOUR8.483e-6257.081-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMM2.468e-6155.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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