FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:326..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PROMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus GN=dxr PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.600e-60
Identity = 126/226 (55.75%), Postives = 155/226 (68.58%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ------------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LGSTGSIGTQTL+I  E  ++F+VVAL AG N+ LL  Q++  +P+VVA+  + +L E++E L ++  K      P ++AG  G+  AA    A  VVTGIVGCAGL PT+AAI+AGKDIALANKETLIA GP V+P   +   ++LPADSEHSAIFQC+Q            G+P   LR I LTASGGAFRDW  E LK   + DA  HPNWSMGKKITVDSA
Sbjct:    1 MLGSTGSIGTQTLEIAKECPEQFKVVALTAGRNLDLLIKQIQEHQPEVVALARKDILPELQERLNSLTGKERPNALPHLVAGNDGLNIAASWHSADLVVTGIVGCAGLLPTLAAIKAGKDIALANKETLIAAGPVVIPELKRSGSRLLPADSEHSAIFQCLQGTPWPENARLSTGIPTPGLRNIQLTASGGAFRDWATEDLKHASIKDATSHPNWSMGKKITVDSA 226          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CHLT3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=dxr PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.497e-58
Identity = 111/212 (52.36%), Postives = 150/212 (70.75%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGT +L++++   ++F    L+AGSN+ LLA+Q KRF+P+ V + NESL  E++  LA   E  EI++GE+G+ E +R  D   V+  +VG AGLKPTV A++AGKD+ LANKETL+ GG  +  L  +H  K+LP DSEHSAIFQC+ G     + +IILTASGG FR W   + +++ VADAL HPNW MG KIT+DSA
Sbjct:    2 KRITILGSTGSIGTNSLEVISRFPEQFCATYLSAGSNVKLLAEQAKRFRPKGVVIMNESLEGELRSLLAG--ESIEIMSGEEGLCEISRRSDTDFVIGSVVGFAGLKPTVEALKAGKDVGLANKETLVVGGEIITSLVEEHGCKMLPVDSEHSAIFQCLVGEAPEFVGKIILTASGGPFRTWEKSRFEQITVADALNHPNWKMGSKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus halodurans GN=dxr PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.357e-58
Identity = 118/213 (55.40%), Postives = 152/213 (71.36%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN-VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K ISVLG+TGSIGTQTLD++A H DKFR+VA++ G N+TL  +Q+ +FKP +V+V    + DE ++ LA+ V E   ++ GE+G+IE A    A  +V  ++G  GL PT+AAIEA K IALANKETL+  G  V   A +H +K+LP DSEHSAIFQ +QG     L RII+TASGG+FRD   ++L  V V DALKHPNWSMG KIT+DSA
Sbjct:    2 KGISVLGATGSIGTQTLDVLANHRDKFRLVAMSVGKNLTLAEEQIHQFKPPLVSV----MTDEDRKTLASKVPEGTRVVCGEEGLIEVATAEKAEILVNAVIGSVGLAPTLAAIEAKKTIALANKETLVTAGHLVTEKAREHGVKLLPVDSEHSAIFQALQGERMDRLHRIIITASGGSFRDKSRDELNGVTVEDALKHPNWSMGAKITIDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_GEOSL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sulfurreducens GN=dxr PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.656e-57
Identity = 113/212 (53.30%), Postives = 150/212 (70.75%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIG  TL++V+ H D+FRVVAL AG+N+ +L  Q++ F+PQ+V+V +E L  E+  +L     KPEI  G +G+I AA   DA  VV  IVG AGL PT AAI AGKD+ALANKETL+  G  ++ L    N+++ P DSEHSA+FQ ++G     + RIILTASGG F + P+++L  V + DAL HPNWSMG+KIT+DSA
Sbjct:    2 KNITILGSTGSIGVSTLEVVSAHPDRFRVVALTAGNNLEMLRQQIETFRPQMVSVLSEKLAVELDRSLPGY--KPEIHYGVEGLIAAATAGDAHMVVAAIVGAAGLVPTAAAIRAGKDVALANKETLVTAGRLIMDLVRDKNVRLYPVDSEHSAVFQSMEGQSRKDVLRIILTASGGPFLNLPLDQLSRVSIDDALNHPNWSMGRKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_GEOLS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=dxr PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.656e-57
Identity = 113/212 (53.30%), Postives = 149/212 (70.28%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIG  TL+IVA H DKFRV++L+   N+ LLA Q+++F+P++ AV + + +  +KE L+ VE   E+  G +G+  AA  P    VV  IVG AGL PT AAI AG D+ALANKETL+  G   + L  +H +K+ P DSEHSAIFQ I+G     + +IILTASGG FR+ P+EKL+ V + DAL HPNWSMG+KIT+DSA
Sbjct:    2 KQIAILGSTGSIGVSTLEIVAAHPDKFRVLSLSGAKNLDLLARQIRQFRPRLAAVADPADIPRLKELLSGVEV--ELTGGVEGLCAAATAPGVQMVVAAIVGAAGLVPTAAAIRAGIDVALANKETLVTAGHLFMELVERHKVKLYPVDSEHSAIFQSIEGHRSQDITKIILTASGGPFRETPLEKLQSVTIQDALNHPNWSMGRKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxr PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.688e-57
Identity = 117/212 (55.19%), Postives = 150/212 (70.75%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K ISVLGSTGSIGTQTL++V  ++D  +V ALAA SNITLL +Q++ F P++V V +     E+K+ ++++E   E  AG  G+I  A    A  VV+ +VG  G+KP + AI  GKDIA ANKETL+  G  ++PL  KHN+ +LP DSEHSAIFQC+QG     + RIILTASGG FR   + +LK VKV DALKHPNWSMG+KIT+DSA
Sbjct:    2 KIISVLGSTGSIGTQTLEVVRNNKD-LKVSALAASSNITLLEEQIREFHPKLVCVYDREKALELKKRVSDLEVTVE--AGMDGLIACATEESADIVVSAVVGMIGIKPVMEAILRGKDIAFANKETLVTAGHLIMPLVKKHNVNLLPVDSEHSAIFQCLQGNESSTVSRIILTASGGPFRGKSLAELKNVKVEDALKHPNWSMGRKITIDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_GEOMG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxr PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.817e-57
Identity = 113/212 (53.30%), Postives = 153/212 (72.17%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +++LGSTGSIGT TL+IVA H D+F+V+AL AGSN+ LL  QV+ F+P++V+V    L  ++   L+  + KPEI  G  G+I AA   +A  VV  IVG AGL PT AAI+AGKD+ALANKETL+  G  ++ L  ++ +++ P DSEHSA+FQ ++G     ++RIILTASGG F + P+++L  V VADAL HPNWSMG+KIT+DSA
Sbjct:    2 KKLTILGSTGSIGTSTLEIVAAHPDRFQVIALTAGSNLELLKQQVEVFRPRLVSVLTADLARQLDRMLS--DPKPEIHHGIPGLIAAATAGEADVVVAAIVGAAGLVPTAAAIKAGKDVALANKETLVTAGRIMMDLVRENGVRLYPVDSEHSAVFQSLEGQSGKDVKRIILTASGGPFLNLPLDRLSRVSVADALNHPNWSMGQKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CHLTE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium tepidum GN=dxr PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.217e-57
Identity = 116/212 (54.72%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +S+LGSTGSIG  TLD+V  H ++F + ALA G ++ +L  Q+  F+P +V+VR+E+  + +K  L   + KPEIL G +G  E A    A  VV+ IVG AGL PTV AIEAGKDIALANKETL+  G  V  L  KH++K+LP DSEHSAIFQ + G     + RIILTASGG FR  P E+LK V    ALKHP WSMG KIT+DSA
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRRHPERFSIAALAEGHDVEMLLKQIDEFRPSLVSVRDEASRERLKGMLG--DHKPEILCGLEGAAEVAAVDGADMVVSAIVGAAGLVPTVRAIEAGKDIALANKETLVVAGQLVSDLVKKHDVKLLPVDSEHSAIFQSLVGHRTEDIERIILTASGGPFRKTPAEELKNVGPEQALKHPQWSMGAKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BREBN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxr PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.217e-57
Identity = 113/212 (53.30%), Postives = 153/212 (72.17%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGS+GT TL++V +H + F VVA+AAG+NI LL  QV+ FKP++V+V NE    E+++ LA  + +PEI+ G +G+   ARH  A  V+T +VG  G+ PT+AAIEAGK I LANKETL++ GP V+  A +  + I+P DSEHSA++QC+QG     + +IILTASGG+FR    E L++V V  AL HPNWSMG KIT+DSA
Sbjct:    2 KKIALLGSTGSVGTSTLEVVGQHPEDFSVVAMAAGTNIDLLTLQVETFKPELVSVGNEKAAVELRDRLAG-KSQPEIVYGAEGLELVARHEAANFVMTAVVGSVGVAPTLAAIEAGKTIGLANKETLVSAGPVVMKRAKEKGVSIIPVDSEHSAVYQCLQGERMEDVAKIILTASGGSFRHLSREDLEQVTVEQALAHPNWSMGAKITIDSA 212          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PROA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dxr PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.073e-56
Identity = 113/212 (53.30%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +S+LGSTGSIG  TLD+V +H D+F +  LA G ++TLLA+Q++ FKP +V+VR+E+  ++++E +   E  PEI  G +G         +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V  L  +H +++LP DSEHSAIFQ + G     + RIILTASGG FR  P E+LK VK   ALKHP WSMG KIT+DSA
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPDRFTITGLAEGHDVTLLAEQIREFKPSIVSVRDEASANQLRELIG--ESGPEIRWGIEGAAVVGEADGSDMVVSAIVGAAGLVPTVRAIKAGKDIALANKETLVVAGQLVSELVREHKVQLLPVDSEHSAIFQSLSGHRTEDIERIILTASGGPFRKTPAEELKLVKPEQALKHPQWSMGAKITIDSA 211          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_PROMA1.600e-6055.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLT31.497e-5852.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACHD4.357e-5855.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSL1.656e-5753.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOLS1.656e-5753.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPH3.688e-5755.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOMG4.817e-5753.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLTE8.217e-5754.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BREBN8.217e-5753.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROA21.073e-5653.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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