FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_XANCB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dxr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 87/211 (41.23%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEG-ALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            ++V G+TGSIG   LD++A H ++ R   L+AGS +  L     + +P    + + +L   +++ L +     +  AG+Q +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++       +RR+ILTASGG FR     +L EV  A A+ HP WSMG KI+VDSA
Sbjct:    9 VAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDALLALCVQHRPAHAVIADAALYPTLRDGLHDAGLTTQAHAGDQALDALAASDACDTVVAAIVGAAGLSSTLAAAAAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLRSCDASRGVRRVILTASGGPFRGRQRAQLAEVTPAQAVAHPKWSMGPKISVDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_DEIRA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Deinococcus radiodurans GN=dxr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 92/210 (43.81%), Postives = 129/210 (61.43%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            ++VLGSTGSIGTQTLD+  +    + V  LAAG N+ LLA+QV+ F+P +V+V + S+L E +E L+ V     ++A       A     A  VV  + G  GL PT AA+EAG+ +ALA KE ++     +   A     +++P DSEH+ ++QC+ G   G +  +ILTASGG FRD P + L  V    ALKHP+WSMG K+T+DSA
Sbjct:    6 LTVLGSTGSIGTQTLDVARQRG--YTVGTLAAGRNLDLLAEQVREFRPALVSV-DGSILAEARERLSGVR----VIADPSEAAVA----QADVVVNAMSGLIGLPPTRAALEAGQAVALATKEAMVTSAHLMWEAAAAGGGRVVPVDSEHTGVYQCLTGEDMGDVAELILTASGGPFRDGPAD-LSAVTPEQALKHPSWSMGPKVTIDSA 203          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CHLFF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlamydophila felis (strain Fe/C-56) GN=dxr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 91/215 (42.33%), Postives = 130/215 (60.47%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA--GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +S+ GSTGSIG QTL IV      F VVALA+ G+N  L  +Q++ F P +V+V +E L  EI++      E PEI A   E+G++ AA   +   VV    G   L   + A+++GK +ALANKE L++ G  +   A ++  +I P DSEH+A++QC++G     +++++LTASGG       E+L  V V D LKHP W MG KITVDS+
Sbjct:    2 KHLSIFGSTGSIGQQTLKIVRSLPHLFNVVALASYGNNKDLFIEQIREFSPSIVSVYDEQLYFEIRK------EFPEIQAFLREEGLMAAATAEEIDMVVAASSGVVALPAIIEAMKSGKVLALANKEVLVSAGEIIKEFAKQYQTEIFPVDSEHNALYQCLEGRNALEVKKLLLTASGGPLLHKTKEELAHVTVQDVLKHPIWHMGAKITVDSS 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BIFLI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=dxr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 84/211 (39.81%), Postives = 130/211 (61.61%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +LGSTGSIGTQ LD++A H ++F V  LAAG ++I LLA Q  +F    VAV +E+ +  ++ ALA    +   + G    + A     A  V+ GI G  GL+P++AA++AG  +ALANKE+++AGG  +     + N +I P DSEHSAI+Q ++      + ++++TASGG FR W    ++ +    AL HP W+MG  +T++S+
Sbjct:    9 VIILGSTGSIGTQGLDVIARHPERFTVTGLAAGGAHIELLAQQAAQFHVSEVAVFDETKIPALQAALAQAGAQGVRVTGGPDSVIAMAGSGANVVLNGITGSIGLEPSIAALKAGSQLALANKESVVAGGHLLFSAQVREN-QINPVDSEHSAIWQSLRSGTHAEVAKLVVTASGGPFRGWKRADMENITPEQALHHPTWNMGPVVTINSS 218          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_NEIMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Neisseria meningitidis serogroup A GN=dxr PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37
Identity = 86/218 (39.45%), Postives = 121/218 (55.50%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ-----GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ +++LGSTGSIG  TLD+V+ H +KFRV ALA    +  LA Q + F P+   V +      ++  L       ++L G Q +++ A   +   V+  IVG  GL   +AA + GK I LANKETL+  G   +  A  +   +LP DSEH+A+FQ +       L E  +  IILTASGG F    +     +    A+KHPNW MG+KI+VDSA
Sbjct:    3 PQVLTILGSTGSIGESTLDVVSRHPEKFRVFALAGHKQVEKLAAQCQTFHPEYAVVADAEHAARLEALLKRDGTATQVLHGAQALVDVASADEVSGVMCAIVGAVGLPSALAAAQKGKTIYLANKETLVVSGALFMETARANGAAVLPVDSEHNAVFQVLPRDYTGRLNEHGIASIILTASGGPFLTADLNTFDSITPDQAVKHPNWRMGRKISVDSA 220          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCS2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium smegmatis GN=dxr PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37
Identity = 95/215 (44.19%), Postives = 127/215 (59.07%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            G + + +LGSTGSIGTQ L+++A + D+F VV LAAG  N  LLA Q  +     VAV + +      EA+ +V       +G   V       +A  V+  +VG  GL+PT+AA+  G  +ALANKE+L+AGGP VL  A     +I+P DSEHSA+ QC++G     L +I+LTASGG F  W  E LK V    A KHP WSMG   T++SA
Sbjct:   11 GRQRVLILGSTGSIGTQALEVIAANPDRFEVVGLAAGGGNPELLAAQRAQTGVAAVAVADPAAA----EAVGDVR-----YSGPDAVTRLVEDTEADVVLNALVGALGLQPTLAALATGARLALANKESLVAGGPLVLKAAAPG--QIVPVDSEHSAMAQCLRGGTRAELDKIVLTASGGPFLGWSAEDLKSVTPEQAGKHPTWSMGPMNTLNSA 214          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_EDWI9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Edwardsiella ictaluri (strain 93-146) GN=dxr PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37
Identity = 90/223 (40.36%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP-EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG----------LPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +++LGSTGSIGT TL +V  +   FRVVAL AG N+ ++  Q + F P+ V + NE     +++ L         +++GE    E A   +   V+  IVG AGL PT+AAI A K + LANKE L+  G   +        ++LP DSEH+AIFQ +            L E  + RI+LT SGG  R  P+     V    A  HPNWSMG+KI+VDSA
Sbjct:    2 KTLTILGSTGSIGTSTLAVVRANPGAFRVVALVAGKNVDVMLQQCREFSPRYVCMANEGAAAALRQRLFECGLGTIAVMSGEHAACELAALDEVDQVMAAIVGAAGLLPTLAAIRANKRVLLANKEALVTCGRLFMEALSHSQAQLLPIDSEHNAIFQSLPTAVQQQLGFACLREHGVTRIVLTGSGGPLRQLPLADFDAVTPTQACAHPNWSMGRKISVDSA 224          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RHIEC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.903e-37
Identity = 88/216 (40.74%), Postives = 129/216 (59.72%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ +S+ GSTGSIG  TL+++ EH    + F +  L    N+ LLA Q +    ++    ++   + +K  L+       + +G+ G++EAA   DA  V+  IVG AGL PT+AA   G DIALANKE L++ G   +    +   ++LP DSEH+AIFQ ++     A+ R+ILTASGG FR+  +E++K V    A  HPNWSMG KI++DSA
Sbjct:    8 PRRLSIFGSTGSIGRNTLNVI-EHLGGRENFEISVLTGNGNVELLARQARSSGARLAVTASDRHYESLKRELSG--SGIAVASGKSGLMEAADR-DADWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAGDLFIKAIREGGGRLLPVDSEHNAIFQVLEENQRHAIERVILTASGGPFRNASLEEMKHVTAETARAHPNWSMGLKISIDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RALEJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ralstonia eutropha (strain JMP134) GN=dxr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.903e-37
Identity = 85/213 (39.91%), Postives = 117/213 (54.93%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE---GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            I++LG+TGSIG  TLD+V  H D++ V AL A   +  LA     F+P    V       E++  L     K E+  GE  +   A      +V+  IVG AGL+PT+AA  AGK + LANKE L+  G   +    +H   +LP DSEH+AIFQC+    +     + +++LTASGG FR      L ++    A  HPNW MG+KI+VDSA
Sbjct:    4 ITILGATGSIGESTLDVVRRHADRYAVHALTAHRQVQKLAASCIEFRPARAVVGTSEAAAELEALLRMAGVKTEVSHGEAALESVASDAQTDSVMAAIVGAAGLRPTLAAARAGKRVLLANKEALVMSGRIFMDAVREHGATLLPIDSEHNAIFQCLPANDQRYRAGVAKVVLTASGGPFRTRDPATLHDITPDQACAHPNWVMGRKISVDSA 216          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_NOCFA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nocardia farcinica GN=dxr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.903e-37
Identity = 92/211 (43.60%), Postives = 126/211 (59.72%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +LGSTGSIGTQ L+++A + DKF VV LAA G N  LLA+Q+          RN ++ D    A  +++     LAG   V E  R  +A  V+  +VG  GL+PT+A + AG  +ALANKE+L+AGG  V   A     +I+P DSEHSA+ QC++G     + R++LTASGG FR W  + L+ V    A  HP WSMG   T++SA
Sbjct:   22 VLLLGSTGSIGTQALEVIAANPDKFEVVGLAARGGNPALLAEQMA-----ATGTRNVAVADPAAGAALDIK-----LAGPHAVTELVRRTEADVVLNALVGSLGLEPTLATLTAGTRLALANKESLVAGGSLVTRAAAPG--QIVPVDSEHSALAQCLRGGRADEVDRLVLTASGGPFRGWTAQMLESVNPEAAKAHPTWSMGLMNTLNSA 220          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_XANCB1.116e-3741.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DEIRA1.116e-3743.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLFF1.116e-3742.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BIFLI1.116e-3739.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NEIMA1.457e-3739.451-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCS21.457e-3744.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EDWI91.457e-3740.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHIEC1.903e-3740.741-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RALEJ1.903e-3739.911-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NOCFA1.903e-3743.601-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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