FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CORDI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium diphtheriae GN=dxr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.445e-37
Identity = 87/215 (40.47%), Postives = 126/215 (58.60%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN---ITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LGSTGSIGTQ L+++A  +D+F VV +AAG     + +   Q+       VAV NE    ++  AL        +L+G     +      A TV+ G+VG  GL+ T+A I+ G+ +ALANKE+L+AGG FV   A     +I+P DSEHSA+ QC++      + +++LTASGG FR W  E++ +V    A  HP WSMG+  T++SA
Sbjct:    3 KKILILGSTGSIGTQALEVIASRQDQFEVVGIAAGGRDPQLIIQQAQMLGLAADHVAVANEKSATQVSRALGAA-----VLSGRDAATDLVESVPADTVLNGLVGSMGLRATLATIQLGEVLALANKESLVAGGTFVTSQAAPG--QIVPVDSEHSAMAQCLRSGASAEVSKLVLTASGGPFRGWSREEMWDVTPEQAAAHPTWSMGQMNTLNSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BIFLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bifidobacterium longum (strain DJO10A) GN=dxr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.445e-37
Identity = 82/211 (38.86%), Postives = 129/211 (61.14%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +LGSTGSIGTQ LD+++ H ++F V  LAAG ++I LLA Q  +F     AV +E+ +  ++ ALA    +   + G    + A     A  V+ GI G  GL+P++AA++AG  +ALANKE+++AGG  +     + N +I P DSEHSAI+Q ++      + ++++TASGG FR W    ++ +    AL HP W+MG  +T++S+
Sbjct:    9 VIILGSTGSIGTQGLDVISRHPERFTVTGLAAGGAHIELLAQQAAQFHVSEAAVFDETKVPALQAALAQAGAQGVRVTGGPDSVIAMAGSGANVVLNGITGSIGLEPSIAALKAGSQLALANKESVVAGGHLLFSAQVREN-QINPVDSEHSAIWQSLRSGTHAEVAKLVVTASGGPFRGWKRADMENITPEQALHHPTWNMGPVVTINSS 218          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_VESOH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=dxr PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.234e-36
Identity = 81/212 (38.21%), Postives = 123/212 (58.02%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LG+TGSIG  TL +V  H DKF + AL+A +N   +     +++P    + +E   +++  A+       ++L+  Q + +   H D   V+  IVG  G+   +   +AGK I LANKE+L+  G   +    + N +++P DSEHSAIFQC++    G L +I LTASGG F   P+ + K +   +A  HPNWSMG+KI+VDSA
Sbjct:    2 KNITLLGATGSIGKSTLSVVDLHPDKFNIFALSANTNWKQMIKLCNKYQPSYAIMVDEQSAEKLSNAITT---DIQVLSSVQALDKIVTHQDTDYVMAAIVGAIGMSSALCGAKAGKRIMLANKESLVLAGDIFMKTVKEFNAELIPVDSEHSAIFQCLKSGKSG-LNKIQLTASGGPFLHTPISQFKSITPDEACAHPNWSMGRKISVDSA 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_EHRCJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia canis (strain Jake) GN=dxr PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.234e-36
Identity = 92/213 (43.19%), Postives = 126/213 (59.15%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +SV GSTG+IG   +DI+    DK++V  L A SNI LLA Q K    + V + + +L  E+K+ L +   K  + AG+ G+I A    D    +  IVG A L P    I +  K IALANKE+++ GG  +L LA + ++KI+P DSEH+AI+Q +       L +I LTASGG       E++K V V D +KHP W MGKKI+VDSA
Sbjct:    2 KTVSVFGSTGAIGQMIIDIIFSELDKYQVKVLVAKSNIQLLAFQAKLVNAERVVITDVNLYRELKDLLLDTNIK--VSAGDDGMIMATSL-DVDYAMMAIVGIAALVPMTYLINSNVKVIALANKESIVCGGALLLSLAKEKDVKIIPLDSEHNAIYQILADKGHKDLEKITLTASGGPLLSMDYEQMKYVTVQDTVKHPVWKMGKKISVDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_XYLFM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xylella fastidiosa (strain M12) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 83/210 (39.52%), Postives = 117/210 (55.71%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            ++VLG+TGSIG   LD++A H  +F V  LAAG  +  L      ++P    + + +L   +++ L       +  AGE  + E        TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  ++  A     +I+P DSEH+AIFQC++      + R+ LTASGG FR      L ++    A+ HP WSMG KI+VDSA
Sbjct:    8 VAVLGATGSIGAAALDVLARHPRQFHVSLLAAGQRVDALLALCHTYRPDHAVIGDATLYTTLRDGLNAAGLATKAYAGEAALAELVASTTCDTVVAAIVGAAGLHSTLAAARAGKRLLLANKESLVLAGMLLMREASISGAEIIPIDSEHNAIFQCLRSRTTNGVHRVTLTASGGPFRGHNRTMLAKITPTQAMAHPTWSMGPKISVDSA 217          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_XYLFA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xylella fastidiosa GN=dxr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 84/210 (40.00%), Postives = 117/210 (55.71%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            ++VLG+TGSIG   LD++A H  +F V  LAAG  +  L      ++P    + + +L   +++ L       +  AGE  + E        TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  ++  A     +I+P DSEH+AIFQC++      + RI LTASGG FR      L ++    A+ HP WSMG KI+VDSA
Sbjct:    8 VAVLGATGSIGAAALDVLARHPRQFHVSLLAAGQRVDALLALCHTYRPDHAVIGDATLYTTLRDGLNAAGLATKAYAGEAALAELVASTTCDTVVAAIVGAAGLHSTLAAARAGKRLLLANKESLVLAGMLLMREASISGAEIIPIDSEHNAIFQCLRSRTTDGVHRITLTASGGPFRGHNRTMLAKITPTQAMAHPTWSMGPKISVDSA 217          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_XANAC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas axonopodis pv. citri GN=dxr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 87/214 (40.65%), Postives = 120/214 (56.07%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEG-ALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ ++V G+TGSIGT  LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L       +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++       +RR+ILTASGG FR      L  V  A A+ HP WSMG KI+VDSA
Sbjct:    6 PRQVAVFGATGSIGTSALDVIARHPERLRASVLSAGSKVDELLALCATHRPAHALIADATLYPALRDGLRARGLATQAHAGAEALDALASSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLRSCDASRGVRRVILTASGGPFRGRDRAALAAVTPAQAVAHPKWSMGPKISVDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RHIL3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 88/216 (40.74%), Postives = 126/216 (58.33%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ +S+ GSTGSIG  TL++V +H    + F +  L    N+ LLA Q K    ++    N+   + +K  L+       + +G+ G++EAA   D   V+  IVG AGL PT+AA   G DIALANKE L++ G   +    +   ++LP DSEH+AIFQ ++     A+ R+ILTASGG FR   +  + +V V  A  HPNWSMG KI++DSA
Sbjct:    8 PRRLSIFGSTGSIGQNTLNVV-DHLGGRENFEISVLTGSGNVELLARQAKSSGARLAVTANDRHYESLKSELSGTGIA--VASGKSGLMEAADR-DVDWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAGDLFIAAIREGGGRLLPVDSEHNAIFQVLEENQRHAVERVILTASGGPFRTASLRDMADVTVETARAHPNWSMGLKISIDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CUPTR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 83/213 (38.97%), Postives = 116/213 (54.46%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE---GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            I++LG+TGSIG  TLD++  H  ++   AL+A   +  LADQ   F+P    V       E++  L +     E+  GE  +   A       V+  IVG AGL+PT+AA  AGK + LANKE L+  G   +    +H   +LP DSEH+AIFQC+          + +++LTASGG FR      L ++    A  HPNW MG+KI+VDSA
Sbjct:    4 ITILGATGSIGESTLDVIRRHPGRYAAHALSAHRQVRKLADQCIEFRPARAVVGTAEAARELETLLRDASVATEVSYGEAALESIAADAQTDAVMAAIVGAAGLRPTLAAARAGKRVLLANKEALVMSGRIFMDAVREHGATLLPIDSEHNAIFQCLPADDPRYGRGVAKVLLTASGGPFRTRDPATLHDISPDQACAHPNWVMGRKISVDSA 216          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CORGL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium glutamicum GN=dxr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 93/215 (43.26%), Postives = 126/215 (58.60%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRF--KPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LGSTGSIGTQ LD++A++ DKF VV +AAG S   L+  Q ++       VAV +      I +AL       EI++G            A TV+  +VG  GL  T+A +E+G  +ALANKE+L+AGG FV   A     +I+P DSEHSA+ QC++      + RI+LTASGG FR W  EK+ EV    A  HP W+MG+  T++SA
Sbjct:    6 KKILILGSTGSIGTQALDVIADNSDKFEVVGIAAGGSQPDLVISQAQQLGLAADKVAVADAQAAAVISKALGG-----EIISGTDAAKILVETTKADTVLNALVGSLGLAATLATLESGAHLALANKESLVAGGEFVTSKAKLG--QIIPVDSEHSAMAQCLRSGTRDEVARIVLTASGGPFRGWTREKMWEVTPEQAAAHPTWAMGQMNTLNSA 213          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_CORDI9.445e-3740.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BIFLD9.445e-3738.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_VESOH1.234e-3638.211-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRCJ1.234e-3643.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XYLFM1.611e-3639.521-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XYLFA1.611e-3640.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANAC1.611e-3640.651-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHIL31.611e-3640.741-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CUPTR1.611e-3638.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CORGL1.611e-3643.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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