FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_WOLSU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Wolinella succinogenes GN=dxr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 85/208 (40.87%), Postives = 128/208 (61.54%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LGSTGSIG   L +  +   +  V  L AG N++LL  Q+  F+P+++ + + S   E+     ++ +  ++L GE+G+IE+     +  V+  +VG  GL+PT+ ++  GK +ALANKE+L+AGG FV         KI+P DSEH +++      P     R+ +TASGGAFRD P+E++   K   AL+HPNWSMG+KITVDSA
Sbjct:    3 LLGSTGSIGQNALSLARDF--RLPVEVLVAGHNLSLLNAQIAEFQPKIIVIADSSRASEL-----SLPKDSKLLFGEEGIIESLHLAQSSFVLNALVGFLGLRPTLESLRLGKTLALANKESLVAGGSFV------DASKIIPVDSEHFSLWFLKSDKP---FSRLFITASGGAFRDTPLEEIPLQKAQAALRHPNWSMGRKITVDSA 194          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CORGB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium glutamicum (strain R) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 92/215 (42.79%), Postives = 126/215 (58.60%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRF--KPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LGSTGSIGTQ LD++A++ DKF VV +AAG S   L+  Q ++       VAV +      + +AL       EI++G            A TV+  +VG  GL  T+A +E+G  +ALANKE+L+AGG FV   A     +I+P DSEHSA+ QC++      + RI+LTASGG FR W  EK+ EV    A  HP W+MG+  T++SA
Sbjct:    6 KKILILGSTGSIGTQALDVIADNSDKFEVVGIAAGGSQPDLVISQAQQLGLAADKVAVADAQAAAVVSKALGG-----EIISGTDAAKILVETTKADTVLNALVGSLGLAATLATLESGAHLALANKESLVAGGEFVTSKAKLG--QIIPVDSEHSAMAQCLRSGTRDEVARIVLTASGGPFRGWTREKMWEVTPEQAAAHPTWAMGQMNTLNSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ANAMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaplasma marginale (strain St. Maries) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 87/215 (40.47%), Postives = 128/215 (59.53%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            G K +SV GSTG IG + + I+ ++ D F VVAL A  +  LLA Q +     +  V  ++  + ++E L       E+ AG  GV++AA   D  + V  I G A L P +  I++G K IALANKE+++ GG  ++  A +  + I+P DSEH+A+FQ +    +G + R+ LTASGG F  W  E+++ V  +DAL HP W MG+KI+VDSA
Sbjct:    5 GRKRVSVFGSTGCIGQKAVQILRDNPDDFEVVALVAKQDAHLLASQARLLSANMAVVAEDAAYETLRELLRGT--CVEVGAGTAGVMDAASR-DVDSAVMAITGIAALHPVIRLIKSGVKSIALANKESVVCGGELLINAAKQTGVNIVPVDSEHNAVFQILAH--DGCVARVTLTASGGPFLRWTREQMQAVTPSDALAHPVWKMGRKISVDSA 214          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ANAMF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaplasma marginale (strain Florida) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 87/215 (40.47%), Postives = 128/215 (59.53%), Query Frame = 1
Query:   82 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            G K +SV GSTG IG + + I+ ++ D F VVAL A  +  LLA Q +     +  V  ++  + ++E L       E+ AG  GV++AA   D  + V  I G A L P +  I++G K IALANKE+++ GG  ++  A +  + I+P DSEH+A+FQ +    +G + R+ LTASGG F  W  E+++ V  +DAL HP W MG+KI+VDSA
Sbjct:    5 GRKRVSVFGSTGCIGQKAVQILRDNPDDFEVVALVAKQDAHLLASQARLLSANMAVVAEDAAYETLRELLRGT--CVEVGAGTAGVMDAASR-DVDSAVMAITGIAALHPVIRLIKSGVKSIALANKESVVCGGELLINAAKQTGVNIVPVDSEHNAVFQILAH--DGCVARVTLTASGGPFLRWTREQMQAVTPSDALAHPVWKMGRKISVDSA 214          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHEWM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 84/218 (38.53%), Postives = 125/218 (57.34%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL ++A + + + V AL A +N+  +    ++++P+V  + +E     ++E L+    K E+  GE  +          TV+  IVG AGL PT+AA++AGK + LANKE+L+  G   +    K   ++LP DSEH+AIFQ +            L E  +  I+LT SGG F   P+  L ++  A A KHPNWSMG+KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVIASNPETYSVYALVANTNVDKMMALCEQYRPKVAHMVDEQAAKSLQERLSP-SLKIEVTTGESQLESIVTSSCVDTVMAAIVGAAGLVPTLAAVKAGKRVLLANKESLVMSGRLFIEEMKKSGAQVLPVDSEHNAIFQALPEPVQQEIGFCDLDEAGISHILLTGSGGPFLTSPLSSLPQMTPAQACKHPNWSMGRKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_NAUPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 86/213 (40.38%), Postives = 125/213 (58.69%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIF-----QCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIG  TL+I   ++    +  L AG+N  +L  Q+K FKP+ V V++    ++I        + P +  GE+ V++      +  +V  +VG AGL+PT+ A E GK IALANKE+L+  G F+         KI P DSEH  ++     +C     +  ++++ +TASGGA RDW +E +K+  + D LKHPNWSMG KIT+DSA
Sbjct:    3 VLGSTGSIGVNTLEIARRYD--IEIEGLVAGNNYEVLNAQIKEFKPKYVVVKDLKTAEKI--------DFPNVKYGEEAVLDMIEKSKSDLIVNALVGDAGLRPTLKAQECGKKIALANKESLVNAGKFI------DTSKITPIDSEHFGLWYLLIEKCRVKSEKCNVKKLYITASGGALRDWSLEDIKKATLKDVLKHPNWSMGVKITIDSA 199          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium paratuberculosis GN=dxr PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 92/212 (43.40%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + VLGSTGSIGTQ L ++A + D+F VV LAAG +N+ TLL  + +        V N ++ DE   A     + P    G +         +A  V+  +VG  GL+PT+AA+E+G  +ALANKE+LIAGGP VL  A     +I+P DSEHSA+ QC++G     + +++LTASGG FR W  E+L+ V    A  HP WSMG   T++SA
Sbjct:   16 VLVLGSTGSIGTQALQVIAANPDRFEVVGLAAGGANLDTLLRQRAE------TGVTNVAVADE--HAARRAGDIP--FCGPEAATRLVEETEADVVLNALVGALGLRPTLAALESGARLALANKESLIAGGPLVLAAAAPG--QIVPVDSEHSALAQCLRGGTGDEVAKLVLTASGGPFRGWTAEELEHVTPEQAGAHPTWSMGPMNTLNSA 215          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCA1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium avium (strain 104) GN=dxr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 92/212 (43.40%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + VLGSTGSIGTQ L ++A + D+F VV LAAG +N+ TLL  + +        V N ++ DE   A     + P    G +         +A  V+  +VG  GL+PT+AA+E+G  +ALANKE+LIAGGP VL  A     +I+P DSEHSA+ QC++G     + +++LTASGG FR W  E+L+ V    A  HP WSMG   T++SA
Sbjct:   16 VLVLGSTGSIGTQALQVIAANPDRFEVVGLAAGGANLDTLLRQRAE------TGVTNVAVADE--HAARRAGDIP--FCGPEAATRLVEETEADVVLNALVGALGLRPTLAALESGARLALANKESLIAGGPLVLAAAAPG--QIVPVDSEHSALAQCLRGGTGDEVAKLVLTASGGPFRGWTAEELEHVTPEQAGAHPTWSMGPMNTLNSA 215          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_XANOP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dxr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36
Identity = 86/213 (40.38%), Postives = 120/213 (56.34%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEG-ALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++    G  +RR+ILTASGG FR      L  V  A A+ HP WSMG KI+VDSA
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHRPAHAVIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTATAAGAEIIPIDSEHSAIFQCLRSCDAGRGVRRVILTASGGPFRGRDRAALAAVTPAQAVAHPKWSMGPKISVDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCUA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium ulcerans (strain Agy99) GN=dxr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36
Identity = 98/226 (43.36%), Postives = 132/226 (58.41%), Query Frame = 1
Query:   79 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVT----------VVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            DG   + VLGSTGSIGTQ L+++A + D+F VV LAAG SN+  L  Q           R E+ + EI    A  +E+   LAG+     A + PDAVT          V+  +VG  GL+PT+AA+ +G  +ALANKE+L+AGGP VL  A     +I+P DSEHSA+ QC++      + +++LTASGG FR W    L+EV    A  HP WSMG   T++SA
Sbjct:   10 DGRLRVLVLGSTGSIGTQALEVIAANPDRFEVVGLAAGGSNLDTLRRQ-----------RAETGVTEI----AIADERAAQLAGDI----AYQEPDAVTRLVEETEADVVLNALVGALGLRPTLAALASGARLALANKESLVAGGPLVLQAAQPG--QIVPVDSEHSALAQCLRAGTPDEVAKLVLTASGGPFRGWSAADLQEVTPEQAGAHPTWSMGPMNTLNSA 214          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_WOLSU2.104e-3640.871-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CORGB2.104e-3642.791-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAMM2.104e-3640.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAMF2.104e-3640.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEWM2.748e-3638.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NAUPA2.748e-3640.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCPA2.748e-3643.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCA12.748e-3643.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANOP3.589e-3640.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCUA3.589e-3643.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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