FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ARTS2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Arthrobacter sp. (strain FB24) GN=dxr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.687e-36
Identity = 94/220 (42.73%), Postives = 126/220 (57.27%), Query Frame = 1
Query:   85 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRN------ESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            P+ I +LGSTGSIGTQ +D+V      F VVAL+AG  N+ LLA Q    K + V   +      + L+D+   A      +PEI+ G       A   +A  V+ GI G  GL PT+AA+++G  +ALANKE+LI GG  V   A +   +I+P DSEHSAI QC++      + R+ILTASGG FR    E+L  V   +AL HP W MG  +T +SA
Sbjct:    3 PRRIVLLGSTGSIGTQAIDVVDGAPHLFEVVALSAGGGNLELLARQAVHTKAKAVGTASGDATALQRLIDDAARATGVAGYRPEIITGPDASTRIAEI-EADVVLNGITGSIGLAPTLAALKSGATLALANKESLIVGGALVKAAAREG--QIVPVDSEHSAIAQCLRSGTAAEVDRLILTASGGPFRGRTREELHNVSPEEALAHPTWDMGLMVTTNSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=dxr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.122e-36
Identity = 98/226 (43.36%), Postives = 132/226 (58.41%), Query Frame = 1
Query:   79 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVT----------VVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            DG   + VLGSTGSIGTQ L+++A + D+F VV LAAG SN+  L  Q           R E+ + EI    A  +E+   LAG+     A + PDAVT          V+  +VG  GL+PT+AA+ +G  +ALANKE+L+AGGP VL  A     +I+P DSEHSA+ QC++      + +++LTASGG FR W    L+EV    A  HP WSMG   T++SA
Sbjct:   10 DGRLRVLVLGSTGSIGTQALEVIAANPDRFEVVGLAAGGSNLDTLLRQ-----------RAETGVTEI----AIADERAAQLAGDI----AYQGPDAVTRLVEETEADVVLNALVGALGLRPTLAALASGARLALANKESLVAGGPLVLQAAQPG--QIVPVDSEHSALAQCLRAGTPDEVAKLVLTASGGPFRGWSAADLQEVTPEQAGAHPTWSMGPMNTLNSA 214          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_XANOR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae GN=dxr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.995e-36
Identity = 86/213 (40.38%), Postives = 120/213 (56.34%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEG-ALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++    G  +RR+ILTASGG FR      L  V  A A+ HP WSMG KI+VDSA
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHQPAHALIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTATAAGAEIIPIDSEHSAIFQCLRSCDAGRGVRRVILTASGGPFRGRDRAGLAAVTPAQAVAHPKWSMGPKISVDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_XANOM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dxr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.995e-36
Identity = 86/213 (40.38%), Postives = 120/213 (56.34%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEG-ALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++    G  +RR+ILTASGG FR      L  V  A A+ HP WSMG KI+VDSA
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHQPAHALIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTATAAGAEIIPIDSEHSAIFQCLRSCDAGRGVRRVILTASGGPFRGRDRAGLAAVTPAQAVAHPKWSMGPKISVDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SULSY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=dxr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.995e-36
Identity = 90/212 (42.45%), Postives = 123/212 (58.02%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +LGSTGS+G+Q LD++ +++D+ +V  L A      L +Q+K FKP  V V N  E  +D+IK           +L GE G+  A  + D    +  I G  G+ PT   ++  K +A ANKE +I  G     L  K+  KILP DSEHSAIFQ ++   +  +RRIILTASGG F + P E  + + V  AL HP WSMGKKIT+DSA
Sbjct:    4 VGILGSTGSVGSQALDVIRKYKDQIKVELLGASKLSENLINQIKEFKPSYVYVENAEEKSIDDIK-----------VLVGEDGLRRAV-NLDLDLFINAIAGIKGILPTYLLLKYNKTLATANKEAIICLGEL---LKDKYK-KILPIDSEHSAIFQILKDSNQKEVRRIILTASGGPFVNMPAEDFENITVKQALIHPRWSMGKKITIDSA 199          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BEUC1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=dxr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.995e-36
Identity = 93/213 (43.66%), Postives = 123/213 (57.75%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + + +LGSTGSIGTQ LD+VA    +F+VV LAAG S++ LLA Q       VVAV      D      A    + E+L G     + A    A  V+ GI G  GL PT+AA+EAG  +ALANKE+L+AG   V   A +   +I+P DSEHSAI Q ++      + R++LTASGG FR W  E++  V    AL HP W+MG  +T +SA
Sbjct:    4 RTVVLLGSTGSIGTQALDVVAAAPGRFQVVGLAAGGSDLELLARQAVAHDVPVVAVAAGEQDDVAAAIRAAGGRRTEVLTGPGAAADLAGR-GADVVLNGITGSVGLAPTLAALEAGSTLALANKESLVAGAALVRA-AQQRADQIVPVDSEHSAIAQALRSGARSEVARLVLTASGGPFRGWSREQMAGVTPEQALAHPTWAMGPVVTTNSA 214          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHEAM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxr PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.364e-35
Identity = 82/218 (37.61%), Postives = 123/218 (56.42%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TLD++  + +++R  AL A +++  + D     +P+   + +ES    + +AL       E+ +G++ ++      +  TV+  IVG AGL PT+AA+ AGK + LANKE L+  G   +    K   ++LP DSEH+AIFQC+            L    +  I+LT SGG F   P++ L  +  A A KHPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGKSTLDVIKRNPERYRAFALVAATSVERMRDLCIEHRPRYAHMVDESAAKRLADALPT-GLGIEVSSGDEALLGLVTAAEVDTVMAAIVGAAGLLPTLAAVRAGKRVLLANKEALVMSGELFMEETKKSGAQLLPVDSEHNAIFQCLPEQVQREIGHCDLSAAGISHILLTGSGGPFLTSPLDTLATMTPAQACKHPNWSMGPKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_XANC5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dxr PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.326e-35
Identity = 85/213 (39.91%), Postives = 119/213 (55.87%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEG-ALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++       +RR+ILTASGG FR      L  V  A A+ HP WSMG KI+VDSA
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASLLSAGSKVDELLALCATHRPAHAVIADAALYPALRDGLRALGLATQAHAGAEALDALASGDVCDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLRSCDASRGVRRVILTASGGPFRGRDRAALAAVTPAQAVAHPKWSMGPKISVDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PSYA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dxr PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.326e-35
Identity = 87/220 (39.55%), Postives = 126/220 (57.27%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            I+VLG+TGSIG  TL I+A     + V AL+    +  L    ++F P+ V V   ++ D+  + L+      E++ G+ G+++ A      TVV  IVG AGL  T+AA  AGK I LANKE L+  G  ++     H+  +LP DSEH+AIFQC+                 +R++ LTASGG F      ++++  VA+A+KHPNWSMG+KI+VDSA
Sbjct:    7 IAVLGATGSIGDSTLAILAAQPQYYDVYALSGYHRLDKLLALCQQFAPKRVGVPTTAV-DDFAKRLSAAGLDIEVVGGDAGLVDIATDSQTDTVVAAIVGAAGLPSTLAAARAGKRILLANKEALVMAGQVMINAVKTHHATLLPLDSEHNAIFQCLPFAIQQDNTQIHRSNHGVRKLWLTASGGPFLQQSFTQMQQASVAEAVKHPNWSMGQKISVDSA 225          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_EHRRW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia ruminantium (strain Welgevonden) GN=dxr PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.326e-35
Identity = 84/213 (39.44%), Postives = 125/213 (58.69%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +S+ GSTG+IG   +D++    D ++V AL A SN+ LLA Q K    ++V + +  L  E+K+ L     K  I  G+ G+ + A   +   V+  IVG A L P V  I AG K IALANKE+++ GG  +  LA + N+ ++P DSEH+AIFQ +       + +I +T SGGA      ++++ + V + +KHP W MGKKI+VDSA
Sbjct:    2 KTVSIFGSTGAIGQMIIDVILASSDSYQVKALVAKSNVQLLAFQAKIVNAEMVVIADVGLYKELKDLLFGTNVK--ISVGDVGM-QMAASLNVDYVMMAIVGIAALVPMVYLISAGVKVIALANKESVVCGGTLLFNLAREKNVNVIPVDSEHNAIFQILHSNDRENIDKITITGSGGALLYMDYDQMRNITVQETIKHPVWKMGKKISVDSA 211          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_ARTS24.687e-3642.731-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCMM6.122e-3643.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANOR7.995e-3640.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANOM7.995e-3640.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SULSY7.995e-3642.451-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BEUC17.995e-3643.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEAM1.364e-3537.611-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANC52.326e-3539.911-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSYA22.326e-3539.551-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRRW2.326e-3539.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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